More than 300 homologs were found in PanDaTox collection
for query gene Dd703_2873 on replicon NC_012880
Organism: Dickeya dadantii Ech703



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  100 
 
 
90 aa  175  2e-43  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  96.67 
 
 
90 aa  172  9.999999999999999e-43  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  95.56 
 
 
90 aa  170  5.999999999999999e-42  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  95.56 
 
 
90 aa  170  5.999999999999999e-42  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  94.44 
 
 
90 aa  164  2.9999999999999998e-40  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  94.44 
 
 
90 aa  164  2.9999999999999998e-40  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  94.44 
 
 
90 aa  164  2.9999999999999998e-40  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  90 
 
 
90 aa  158  2e-38  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  90 
 
 
90 aa  158  2e-38  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  90 
 
 
90 aa  158  2e-38  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  90 
 
 
90 aa  158  2e-38  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  90 
 
 
90 aa  158  2e-38  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  90 
 
 
90 aa  158  2e-38  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_012892  B21_00396  hypothetical protein  90 
 
 
90 aa  158  2e-38  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  90 
 
 
90 aa  158  2e-38  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  90 
 
 
90 aa  158  2e-38  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  87.78 
 
 
90 aa  157  3e-38  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  88.89 
 
 
90 aa  157  6e-38  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  88.89 
 
 
90 aa  157  6e-38  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  88.89 
 
 
90 aa  157  6e-38  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  88.89 
 
 
90 aa  157  6e-38  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  88.89 
 
 
90 aa  157  6e-38  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  86.67 
 
 
101 aa  152  2e-36  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  80 
 
 
90 aa  141  3e-33  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  78.89 
 
 
90 aa  140  7e-33  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  78.89 
 
 
90 aa  139  9e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  78.89 
 
 
90 aa  139  9e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  75.56 
 
 
90 aa  139  9.999999999999999e-33  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  74.44 
 
 
90 aa  138  3e-32  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  74.44 
 
 
90 aa  137  3.9999999999999997e-32  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  75.28 
 
 
90 aa  137  4.999999999999999e-32  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  74.44 
 
 
90 aa  137  6e-32  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  75.56 
 
 
90 aa  136  7.999999999999999e-32  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  76.67 
 
 
90 aa  136  1e-31  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  72.22 
 
 
98 aa  135  1e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  76.67 
 
 
90 aa  136  1e-31  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  73.33 
 
 
90 aa  136  1e-31  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  74.44 
 
 
90 aa  135  1e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  76.67 
 
 
90 aa  135  2e-31  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  73.33 
 
 
91 aa  135  2e-31  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  75.56 
 
 
90 aa  134  4e-31  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  72.22 
 
 
90 aa  134  5e-31  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  72.22 
 
 
90 aa  133  9e-31  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  73.33 
 
 
91 aa  132  9.999999999999999e-31  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  70 
 
 
90 aa  131  1.9999999999999998e-30  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  73.33 
 
 
90 aa  131  3e-30  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  68.89 
 
 
90 aa  130  6e-30  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_004578  PSPTO_3723  DNA-binding protein HU-beta  74.44 
 
 
90 aa  130  7.999999999999999e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.612497  n/a   
 
 
-
 
NC_007005  Psyr_1750  histone-like DNA-binding protein  74.44 
 
 
90 aa  130  7.999999999999999e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.519537  normal  0.0235988 
 
 
-
 
NC_007492  Pfl01_3694  nucleoid protein HU beta subunit  74.44 
 
 
90 aa  130  7.999999999999999e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.566059  normal 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  71.11 
 
 
90 aa  130  7.999999999999999e-30  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  68.89 
 
 
90 aa  129  2.0000000000000002e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  70 
 
 
90 aa  128  3e-29  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  71.11 
 
 
91 aa  127  4.0000000000000003e-29  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  67.78 
 
 
90 aa  127  5.0000000000000004e-29  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  70 
 
 
91 aa  127  7.000000000000001e-29  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  68.89 
 
 
90 aa  125  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  67.78 
 
 
90 aa  125  2.0000000000000002e-28  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  71.11 
 
 
90 aa  124  4.0000000000000003e-28  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  71.11 
 
 
90 aa  124  4.0000000000000003e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  66.67 
 
 
90 aa  122  1e-27  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  66.67 
 
 
90 aa  122  1e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  61.11 
 
 
90 aa  121  4e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  62.22 
 
 
90 aa  120  5e-27  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  67.78 
 
 
90 aa  120  6e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  68.89 
 
 
90 aa  120  7e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  65.56 
 
 
94 aa  119  9e-27  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  65.56 
 
 
94 aa  119  9e-27  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  62.22 
 
 
90 aa  119  9.999999999999999e-27  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_008825  Mpe_A1956  nucleoid protein Hbs  66.67 
 
 
90 aa  118  1.9999999999999998e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.582961  normal  0.45981 
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  66.67 
 
 
90 aa  119  1.9999999999999998e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3065  nucleoid protein Hbs  66.67 
 
 
90 aa  117  3.9999999999999996e-26  Polaromonas sp. JS666  Bacteria  normal  0.135138  normal  0.394857 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  60 
 
 
90 aa  117  3.9999999999999996e-26  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  67.42 
 
 
90 aa  117  4.9999999999999996e-26  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  62.22 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  117  6e-26  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  61.11 
 
 
90 aa  117  6e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1789  histone family protein DNA-binding protein  64.44 
 
 
90 aa  117  7e-26  Variovorax paradoxus S110  Bacteria  normal  0.970942  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  63.33 
 
 
90 aa  116  7.999999999999999e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  67.78 
 
 
90 aa  116  7.999999999999999e-26  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  117  7.999999999999999e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  66.29 
 
 
90 aa  117  7.999999999999999e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  58.89 
 
 
90 aa  116  9e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  65.56 
 
 
90 aa  116  9e-26  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  65.56 
 
 
90 aa  116  9e-26  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  61.8 
 
 
90 aa  116  9.999999999999999e-26  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  62.22 
 
 
90 aa  115  9.999999999999999e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  58.89 
 
 
90 aa  115  9.999999999999999e-26  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  61.8 
 
 
90 aa  116  9.999999999999999e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  61.8 
 
 
90 aa  116  9.999999999999999e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  59.55 
 
 
90 aa  116  9.999999999999999e-26  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
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