| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0822 |
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| Symbol | hupB |
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| ID | 6988755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 914503 |
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| End bp | 914799 |
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| Gene Length | 297 bp |
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| Protein Length | 98 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379226 |
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| Product | DNA-binding protein HU-beta |
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| Protein accession | YP_002262329 |
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| Protein GI | 209694401 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0776] Bacterial nucleoid DNA-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.172487 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAATT TAAAGGGGAA TACCGTGAAT AAATCTCAAT TAGTTGATCA GATTGCTGAA
AATGCAGATA TCTCAAAAGC AGCAGCAGGC CGTGCTTTAG ATGCATTAGT TGAAACAGTG
ACAGAGACAC TAAAAAGTGG CGATCAAGTA ACACTTGTTG GTTTCGGCTC GTTTATCGTT
CGTGAGCGTG CTGCTCGTAC AGGTCGTAAT CCTAAGACTG GTGAAGCAAT CGAGATTTCT
GCTGCAAAAG TACCTGCGTT TAAAGCAGGT AAAGCATTAA AAGATGCGTG TAACTAA
|
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| Protein sequence | MNNLKGNTVN KSQLVDQIAE NADISKAAAG RALDALVETV TETLKSGDQV TLVGFGSFIV
RERAARTGRN PKTGEAIEIS AAKVPAFKAG KALKDACN
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