More than 300 homologs were found in PanDaTox collection
for query gene Bpro_3788 on replicon NC_007948
Organism: Polaromonas sp. JS666



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007948  Bpro_3788  short-chain dehydrogenase/reductase SDR  100 
 
 
264 aa  537  9.999999999999999e-153  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1113  short-chain dehydrogenase/reductase SDR  82.2 
 
 
264 aa  449  1e-125  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011311  VSAL_p840_70  hypothetical protein  37.21 
 
 
249 aa  172  3.9999999999999995e-42  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_07435  putative short-chain dehydrogenase/reductase  31.13 
 
 
269 aa  101  2e-20  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.492431  n/a   
 
 
-
 
NC_013132  Cpin_1462  short-chain dehydrogenase/reductase SDR  31.52 
 
 
261 aa  99.4  5e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1481  short-chain dehydrogenase/reductase SDR  30.74 
 
 
253 aa  99  7e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.196322  normal  0.805943 
 
 
-
 
NC_008148  Rxyl_2415  short-chain dehydrogenase/reductase SDR  32.95 
 
 
255 aa  94.7  1e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0149136  n/a   
 
 
-
 
NC_008701  Pisl_1089  short-chain dehydrogenase/reductase SDR  32.17 
 
 
260 aa  94  2e-18  Pyrobaculum islandicum DSM 4184  Archaea  normal  normal 
 
 
-
 
NC_014212  Mesil_0968  short-chain dehydrogenase/reductase SDR  28.79 
 
 
261 aa  92.4  7e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.274647 
 
 
-
 
NC_010501  PputW619_2609  short-chain dehydrogenase/reductase SDR  30.65 
 
 
250 aa  91.7  1e-17  Pseudomonas putida W619  Bacteria  normal  normal  0.328906 
 
 
-
 
NC_010525  Tneu_0044  short-chain dehydrogenase/reductase SDR  31.4 
 
 
259 aa  90.1  3e-17  Thermoproteus neutrophilus V24Sta  Archaea  normal  normal  0.0333473 
 
 
-
 
NC_013411  GYMC61_1799  short-chain dehydrogenase/reductase SDR  28.29 
 
 
261 aa  87  3e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009954  Cmaq_0839  short-chain dehydrogenase/reductase SDR  25.78 
 
 
263 aa  87  3e-16  Caldivirga maquilingensis IC-167  Archaea  normal  0.544381  normal 
 
 
-
 
NC_013730  Slin_5846  short-chain dehydrogenase/reductase SDR  28.4 
 
 
262 aa  86.3  5e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.704953 
 
 
-
 
NC_009376  Pars_0047  short-chain dehydrogenase/reductase SDR  32.3 
 
 
260 aa  85.9  7e-16  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_012793  GWCH70_0923  short-chain dehydrogenase/reductase SDR  27.13 
 
 
261 aa  85.5  8e-16  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0883  short-chain dehydrogenase/reductase SDR  28.35 
 
 
264 aa  85.1  9e-16  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2272  short-chain dehydrogenase/reductase SDR  28.06 
 
 
253 aa  84  0.000000000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.851754  normal  0.710684 
 
 
-
 
NC_007511  Bcep18194_B1110  short chain dehydrogenase  27.24 
 
 
265 aa  84  0.000000000000002  Burkholderia sp. 383  Bacteria  normal  0.0177225  normal  0.229286 
 
 
-
 
NC_013757  Gobs_3777  short-chain dehydrogenase/reductase SDR  25.88 
 
 
262 aa  84.3  0.000000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0924  short-chain dehydrogenase/reductase SDR  27.49 
 
 
260 aa  83.6  0.000000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1422  short-chain dehydrogenase/reductase SDR  30.42 
 
 
253 aa  82.4  0.000000000000006  Acidiphilium cryptum JF-5  Bacteria  normal  0.182902  n/a   
 
 
-
 
NC_009073  Pcal_0013  short-chain dehydrogenase/reductase SDR  29.69 
 
 
260 aa  82.8  0.000000000000006  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_009052  Sbal_3370  short-chain dehydrogenase/reductase SDR  26.77 
 
 
248 aa  81.6  0.00000000000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_3075  short-chain dehydrogenase/reductase SDR  30.83 
 
 
262 aa  82  0.00000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.209308  normal 
 
 
-
 
NC_007799  ECH_0669  3-oxoacyl-(acyl-carrier-protein) reductase  29.3 
 
 
247 aa  81.3  0.00000000000001  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.154574  n/a   
 
 
-
 
NC_008391  Bamb_4098  short chain dehydrogenase  26.46 
 
 
265 aa  80.9  0.00000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.474708 
 
 
-
 
NC_008554  Sfum_0112  short-chain dehydrogenase/reductase SDR  29.18 
 
 
263 aa  80.5  0.00000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4563  short chain dehydrogenase  26.46 
 
 
265 aa  79.7  0.00000000000004  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.00447639  hitchhiker  0.00143466 
 
 
-
 
NC_010086  Bmul_3816  short-chain dehydrogenase/reductase SDR  25.94 
 
 
263 aa  79.3  0.00000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.000362562 
 
 
-
 
NC_008786  Veis_4114  short-chain dehydrogenase/reductase SDR  27.13 
 
 
259 aa  79  0.00000000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.245647 
 
 
-
 
NC_013595  Sros_6972  short chain dehydrogenase  29.77 
 
 
251 aa  78.2  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2908  short-chain dehydrogenase/reductase SDR  29.96 
 
 
264 aa  78.6  0.0000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.933978  normal 
 
 
-
 
NC_009440  Msed_2072  short-chain dehydrogenase/reductase SDR  27.34 
 
 
259 aa  78.6  0.0000000000001  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_009674  Bcer98_1545  short-chain dehydrogenase/reductase SDR  26.36 
 
 
261 aa  77.4  0.0000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00435006  n/a   
 
 
-
 
NC_007336  Reut_C6108  Short-chain dehydrogenase/reductase SDR  29.02 
 
 
255 aa  77.4  0.0000000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0758  short-chain dehydrogenase/reductase SDR  27.17 
 
 
262 aa  77.4  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B0928  Short-chain dehydrogenase/reductase SDR  27.03 
 
 
263 aa  77  0.0000000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7068  SDR family dehydrogenase/reductase  28.79 
 
 
257 aa  77  0.0000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.894165 
 
 
-
 
NC_013947  Snas_6457  short-chain dehydrogenase/reductase SDR  28.19 
 
 
252 aa  76.6  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.805943 
 
 
-
 
NC_009620  Smed_4500  3-hydroxybutyrate dehydrogenase  26.05 
 
 
258 aa  76.3  0.0000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0782266 
 
 
-
 
NC_010515  Bcenmc03_5596  short chain dehydrogenase  25.68 
 
 
265 aa  76.6  0.0000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.329102 
 
 
-
 
NC_008061  Bcen_3663  short chain dehydrogenase  25.68 
 
 
265 aa  76.6  0.0000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4704  short chain dehydrogenase  25.68 
 
 
265 aa  76.6  0.0000000000004  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000843868  normal  0.155835 
 
 
-
 
NC_007778  RPB_1751  Short-chain dehydrogenase/reductase SDR  28.19 
 
 
257 aa  76.3  0.0000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0168825 
 
 
-
 
NC_011369  Rleg2_0941  short-chain dehydrogenase/reductase SDR  27.34 
 
 
262 aa  76.3  0.0000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.163833  normal 
 
 
-
 
NC_009565  TBFG_13563  short chain dehydrogenase  27.42 
 
 
260 aa  76.3  0.0000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  decreased coverage  0.00000000268632 
 
 
-
 
NC_007958  RPD_3548  short-chain dehydrogenase/reductase SDR  28.79 
 
 
257 aa  75.9  0.0000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4233  short-chain dehydrogenase/reductase SDR  28.19 
 
 
257 aa  75.9  0.0000000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1090  short-chain dehydrogenase/reductase SDR  25.88 
 
 
262 aa  75.5  0.0000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.538623 
 
 
-
 
NC_007778  RPB_2264  Short-chain dehydrogenase/reductase SDR  26.92 
 
 
255 aa  75.9  0.0000000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.136651  normal 
 
 
-
 
NC_011891  A2cp1_2944  short-chain dehydrogenase/reductase SDR  30.38 
 
 
256 aa  75.5  0.0000000000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_40900  putative short-chain dehydrogenase  29.1 
 
 
253 aa  75.9  0.0000000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4238  short chain dehydrogenase  26.85 
 
 
268 aa  75.5  0.0000000000008  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3132  3-hydroxybutyrate dehydrogenase  27.65 
 
 
258 aa  75.5  0.0000000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0908587  normal 
 
 
-
 
NC_010511  M446_0236  short-chain dehydrogenase/reductase SDR  28.4 
 
 
255 aa  75.5  0.0000000000008  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00815339 
 
 
-
 
NC_011757  Mchl_3449  short-chain dehydrogenase/reductase SDR  28.79 
 
 
263 aa  74.7  0.000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.637652  normal  0.978544 
 
 
-
 
CP001800  Ssol_1953  short-chain dehydrogenase/reductase SDR  24.81 
 
 
265 aa  75.1  0.000000000001  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_007348  Reut_B5205  Short-chain dehydrogenase/reductase SDR  27.69 
 
 
294 aa  75.1  0.000000000001  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00959428  n/a   
 
 
-
 
NC_007413  Ava_0311  Short-chain dehydrogenase/reductase SDR  25.98 
 
 
262 aa  74.7  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0220  short-chain dehydrogenase/reductase SDR  30.92 
 
 
247 aa  75.1  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3989  short chain dehydrogenase  25.68 
 
 
265 aa  74.7  0.000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.826773  normal  0.0182099 
 
 
-
 
NC_007952  Bxe_B0421  short chain dehydrogenase  27.73 
 
 
257 aa  75.1  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0610  putative short-chain dehydrogenase/reductase  28.85 
 
 
286 aa  75.1  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0678259 
 
 
-
 
CP001800  Ssol_0092  short-chain dehydrogenase/reductase SDR  28.35 
 
 
261 aa  74.7  0.000000000002  Sulfolobus solfataricus 98/2  Archaea  normal  0.658304  n/a   
 
 
-
 
NC_010676  Bphyt_5751  short-chain dehydrogenase/reductase SDR  27.17 
 
 
254 aa  74.3  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0937136  normal 
 
 
-
 
NC_009379  Pnuc_1069  short-chain dehydrogenase/reductase SDR  25.87 
 
 
261 aa  74.7  0.000000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.199007  n/a   
 
 
-
 
NC_011145  AnaeK_2852  short-chain dehydrogenase/reductase SDR  30 
 
 
256 aa  74.7  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2585  short chain dehydrogenase  27.38 
 
 
259 aa  73.9  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  0.25122  n/a   
 
 
-
 
NC_008009  Acid345_0122  short-chain dehydrogenase/reductase SDR  29.41 
 
 
256 aa  73.9  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.105219 
 
 
-
 
NC_008254  Meso_1537  short-chain dehydrogenase/reductase SDR  25.98 
 
 
259 aa  73.9  0.000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.460679  n/a   
 
 
-
 
NC_010552  BamMC406_3582  short-chain dehydrogenase/reductase SDR  28.95 
 
 
266 aa  74.3  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.30636 
 
 
-
 
NC_010678  Rpic_3998  short chain dehydrogenase  27.73 
 
 
253 aa  73.9  0.000000000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4111  short chain dehydrogenase  27.73 
 
 
253 aa  73.9  0.000000000003  Ralstonia pickettii 12D  Bacteria  normal  normal  0.173439 
 
 
-
 
NC_011886  Achl_3307  short-chain dehydrogenase/reductase SDR  27.69 
 
 
266 aa  73.6  0.000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_3128  short-chain dehydrogenase/reductase SDR  27.59 
 
 
263 aa  73.9  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0549693 
 
 
-
 
NC_010623  Bphy_4056  short chain dehydrogenase  26.56 
 
 
257 aa  73.6  0.000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2860  3-hydroxybutyrate dehydrogenase  27.76 
 
 
258 aa  73.2  0.000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0187623  normal  0.981149 
 
 
-
 
NC_007498  Pcar_1364  putative glucose/ribitol dehydrogenase  27.41 
 
 
257 aa  73.2  0.000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  8.333439999999999e-20  n/a   
 
 
-
 
NC_011071  Smal_3069  short-chain dehydrogenase/reductase SDR  29.53 
 
 
252 aa  73.6  0.000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0408517 
 
 
-
 
NC_009921  Franean1_2519  short-chain dehydrogenase/reductase SDR  30.2 
 
 
258 aa  73.2  0.000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1077  short-chain dehydrogenase/reductase SDR  29.18 
 
 
262 aa  73.2  0.000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0325  short-chain dehydrogenase/reductase SDR  27.56 
 
 
304 aa  72.8  0.000000000005  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2079  short chain dehydrogenase  27.48 
 
 
255 aa  72.8  0.000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4708  short-chain dehydrogenase/reductase SDR  26.82 
 
 
279 aa  72.8  0.000000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.270996  normal 
 
 
-
 
NC_007760  Adeh_2760  short-chain dehydrogenase/reductase SDR  30.15 
 
 
256 aa  72.4  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  hitchhiker  0.0058487  n/a   
 
 
-
 
NC_012850  Rleg_2687  short-chain dehydrogenase/reductase SDR  30.12 
 
 
256 aa  72.4  0.000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.192127  normal 
 
 
-
 
NC_009486  Tpet_1580  short-chain dehydrogenase/reductase SDR  26.17 
 
 
237 aa  72.8  0.000000000006  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5938  3-ketoacyl-(acyl-carrier-protein) reductase  26.95 
 
 
234 aa  72.4  0.000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.355908  decreased coverage  0.00196456 
 
 
-
 
NC_013093  Amir_0418  short-chain dehydrogenase/reductase SDR  27.8 
 
 
245 aa  72.4  0.000000000007  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00843006  n/a   
 
 
-
 
NC_013595  Sros_3658  short-chain dehydrogenase/reductase SDR  27.06 
 
 
250 aa  72.4  0.000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  27.63 
 
 
261 aa  72.4  0.000000000007  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_009636  Smed_3570  short-chain dehydrogenase/reductase SDR  27.34 
 
 
259 aa  72.4  0.000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.00199675 
 
 
-
 
NC_010676  Bphyt_7167  short-chain dehydrogenase/reductase SDR  28.52 
 
 
257 aa  72.4  0.000000000008  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1151  3-oxoacyl-[acyl-carrier-protein] reductase  27.59 
 
 
234 aa  72.4  0.000000000008  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.256582 
 
 
-
 
NC_013131  Caci_6493  short-chain dehydrogenase/reductase SDR  29.46 
 
 
258 aa  72  0.000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1415  3-oxoacyl-(acyl-carrier-protein) reductase  27.72 
 
 
248 aa  72  0.000000000009  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.949681  normal  0.622645 
 
 
-
 
NC_009511  Swit_1480  short-chain dehydrogenase/reductase SDR  28.52 
 
 
251 aa  72  0.000000000009  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3507  short-chain dehydrogenase/reductase SDR  26.82 
 
 
294 aa  71.6  0.00000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2043  short chain dehydrogenase  27.2 
 
 
254 aa  71.6  0.00000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.681724 
 
 
-
 
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