30 homologs were found in PanDaTox collection
for query gene BamMC406_5643 on replicon NC_010557
Organism: Burkholderia ambifaria MC40-6



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010557  BamMC406_5643  type III secretion system apparatus protein YscQ/HrcQ  100 
 
 		 374 aa  741    Burkholderia ambifaria MC40-6  Bacteria  normal  0.82857  normal  0.117856 
 
 
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NC_008392  Bamb_5860  type III secretion system apparatus protein YscQ/HrcQ  96.93 
 
 		 326 aa  633  1e-180  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
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NC_007435  BURPS1710b_A0429  SctQ  35.28 
 
 		 435 aa  166  8e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  0.193635  n/a   
 
 
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NC_010515  Bcenmc03_5929  type III secretion system apparatus protein YscQ/HrcQ  35.71 
 
 		 364 aa  163  5.0000000000000005e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0597281 
 
 
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NC_009075  BURPS668_A1999  type III secretion system apparatus protein YscQ/HrcQ  34.88 
 
 		 359 aa  159  7e-38  Burkholderia pseudomallei 668  Bacteria  normal  0.501081  n/a   
 
 
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NC_009078  BURPS1106A_A1907  type III secretion system apparatus protein YscQ/HrcQ  34.88 
 
 		 359 aa  157  3e-37  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0878707  n/a   
 
 
-
 
NC_009075  BURPS668_A2279  type III secretion system apparatus protein YscQ/HrcQ  31.79 
 
 		 424 aa  125  2e-27  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_03405  type III secretion apparatus protein, YscQ/HrcQ family  34.18 
 
 		 273 aa  121  1.9999999999999998e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II0753  surface presentation of antigens domain-containing protein  31.58 
 
 		 423 aa  117  3e-25  Burkholderia thailandensis E264  Bacteria  normal  0.67104  n/a   
 
 
-
 
NC_009079  BMA10247_A0636  type III secretion inner membrane protein SctQ  30.84 
 
 		 645 aa  109  7.000000000000001e-23  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1956  type III secretion inner membrane protein SctQ  30.84 
 
 		 645 aa  109  7.000000000000001e-23  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA1629  type III secretion inner membrane protein SctQ  30.84 
 
 		 645 aa  109  7.000000000000001e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0677  type III secretion inner membrane protein SctQ  30.8 
 
 		 428 aa  109  9.000000000000001e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  0.129749  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2196  type III secretion system apparatus protein YscQ/HrcQ  50.53 
 
 		 436 aa  91.7  2e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  0.583372  n/a   
 
 
-
 
NC_003296  RSp0861  Hrp conserved protein HRCQ  27.94 
 
 		 354 aa  90.9  3e-17  Ralstonia solanacearum GMI1000  Bacteria  normal  0.264626  normal  0.0266319 
 
 
-
 
NC_008391  Bamb_4214  type III secretion system apparatus protein YscQ/HrcQ  25.94 
 
 		 381 aa  70.1  0.00000000007  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.964929 
 
 
-
 
NC_008752  Aave_0450  type III secretion system apparatus protein YscQ/HrcQ  28.9 
 
 		 352 aa  68.9  0.0000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.180414  normal  0.188335 
 
 
-
 
NC_010086  Bmul_3755  type III secretion system apparatus protein YscQ/HrcQ  27.37 
 
 		 443 aa  66.2  0.0000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  decreased coverage  0.00143257 
 
 
-
 
NC_010552  BamMC406_4736  type III secretion system apparatus protein YscQ/HrcQ  25.94 
 
 		 381 aa  66.2  0.0000000008  Burkholderia ambifaria MC40-6  Bacteria  normal  0.458134  normal  0.482732 
 
 
-
 
NC_008543  Bcen2424_4839  type III secretion system apparatus protein YscQ/HrcQ  29.38 
 
 		 384 aa  65.9  0.000000001  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.0073947  decreased coverage  0.0012825 
 
 
-
 
NC_008061  Bcen_3527  Type III secretion system apparatus protein YscQ/HrcQ  29.38 
 
 		 384 aa  65.9  0.000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.20838  n/a   
 
 
-
 
NC_010515  Bcenmc03_5445  type III secretion system apparatus protein YscQ/HrcQ  29.38 
 
 		 384 aa  65.9  0.000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.322534  normal  0.0784231 
 
 
-
 
NC_013456  VEA_003363  type III secretion inner membrane protein YscQ  28.73 
 
 		 322 aa  55.5  0.000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_42610  type III secretion system protein  36 
 
 		 309 aa  50.4  0.00005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.18956  normal  1 
 
 
-
 
NC_010157  YpAngola_B0044  type III secretion system protein  29.15 
 
 		 307 aa  48.1  0.0002  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000000000156559  normal  1 
 
 
-
 
NC_009783  VIBHAR_01727  type III secretion system protein  24.42 
 
 		 322 aa  45.4  0.001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007650  BTH_II0835  type III secretion system protein BsaV  28.26 
 
 		 320 aa  45.8  0.001  Burkholderia thailandensis E264  Bacteria  normal  0.0264948  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2080  type III secretion system apparatus protein YscQ/HrcQ  32.97 
 
 		 323 aa  43.1  0.007  Burkholderia pseudomallei 1106a  Bacteria  normal  0.355086  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0578  type III secretion system apparatus protein YscQ/HrcQ  28.65 
 
 		 319 aa  43.1  0.007  Burkholderia pseudomallei 1710b  Bacteria  normal  0.194369  n/a   
 
 
-
 
NC_009075  BURPS668_A2168  type III secretion system apparatus protein YscQ/HrcQ  32.97 
 
 		 323 aa  43.1  0.008  Burkholderia pseudomallei 668  Bacteria  normal  0.712652  n/a   
 
 
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