| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5643 |
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| Symbol | |
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| ID | 6182458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 148376 |
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| End bp | 149500 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641688775 |
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| Product | type III secretion system apparatus protein YscQ/HrcQ |
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| Protein accession | YP_001815639 |
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| Protein GI | 172064927 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.82857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.117856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACCA CACGAACGCT ACCGACCAAC GACGTTCCCG CAGGCGGCCA ACCGCACGCG
GTTGCCGTTT CGCTCGATCC CGCACGGCTG CCCGCGCTTG CGGCCGCCAC CGCGCGCCAG
CATCGGCTCG CCGTCGACGA GCGCTTGAGC GCGCTTCTCA CTCACACGCT CGGCGTCTCT
GCCTTCGGCG TCGGCGCGCG CGATCTCGTG GACCCGGCGC GCGCCGCCAT CGTGCGCCTG
CGCTGGGGCA TCGAAATGGC AGCGGTGCGC ATCGACGTCG GACAGCACGC GGGGCTCGCG
AGCGTGGTCG CGTCGGACGA GCCCGCCAAC GAGCCGCTGC GCCAGGCCGT GTGCGCCATT
CTGCTCGATC CGGTGCGACG CGCGCTGCAG GCGCTCGGGT TCGACGGCGT GGACGTGCTC
TCGCTCGAAC GCGCCGCGCC GCAGACGCTG CGTGCGCCTT GCTGCGCGTT CACGTTCCGC
GTGGGCGACG CACGCTTCGA CGCAGCCATC GAGCACATCG ACGGTGGCTG GCTCGACGCC
CTCGAGGCAC TCGTGGCCCG CCAATGCACG CCGTTCGCCA CGCACGTCAG CGAGATTACC
GTTCCCGGCC GGCTGCAGAT CGGCGAGAAA ACGATGAACG TGACGACGCT CGATTCGCTG
CGCGCGGGGG ACGTCATCTT GCGTGCCGTA CCCGAAGCCA CCCGCGCGCT CTTCGCGAGC
GAGCGCCCAT CCGCCCCGAT GCCAGTCGTC TGGGGCCGCT ACGGGACGCG GCAACTGCGC
GCCGTGGCAG ACGTCACCCA CCATCTGATG ACCTTGAGCG AGGACCCAAC CATGAGCCAT
GACACGCAGT TCAATGCGCC GCTTACCGAT TCGATCGACA CGCCCGTCGA CATCAGCCAG
CTGGACCTGC CGCTGAAGCT CGAGATCGAC ACGGTTTCGA TGCCGGTCGC CCAGCTCTCG
GCGCTGCGCG CGGGCTACGT GCTCGAGCTT CCCACCGCGC TGCCCGATGC ACGCGTGCGG
CTCGTCACCT ACGGGCAGAC GATCGGCTTC GGCGAACTCG TGAGCGTCGG CGATCATCTC
GGCGTGCGTC TCGTTCAGCT GTCGCGCGGC CATGGTTCAG TTTAG
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| Protein sequence | MDTTRTLPTN DVPAGGQPHA VAVSLDPARL PALAAATARQ HRLAVDERLS ALLTHTLGVS
AFGVGARDLV DPARAAIVRL RWGIEMAAVR IDVGQHAGLA SVVASDEPAN EPLRQAVCAI
LLDPVRRALQ ALGFDGVDVL SLERAAPQTL RAPCCAFTFR VGDARFDAAI EHIDGGWLDA
LEALVARQCT PFATHVSEIT VPGRLQIGEK TMNVTTLDSL RAGDVILRAV PEATRALFAS
ERPSAPMPVV WGRYGTRQLR AVADVTHHLM TLSEDPTMSH DTQFNAPLTD SIDTPVDISQ
LDLPLKLEID TVSMPVAQLS ALRAGYVLEL PTALPDARVR LVTYGQTIGF GELVSVGDHL
GVRLVQLSRG HGSV
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