Gene BMAA1629 details

Gene Information

• Locus tag: BMAA1629
• Symbol: sctQ
• ID: 3087409
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei ATCC 23344
• Kingdom: Bacteria
• Replicon accession: NC_006349
• Strand: -
• Start bp: 1765837
• End bp: 1767774
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 637565512
• Product: type III secretion inner membrane protein SctQ
• Protein accession: YP_106204
• Protein GI: 53716432
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1886] Flagellar motor switch/type III secretory pathway protein
• TIGRFAM ID: [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCCG CCGATCTGAG GCCCGTGCGG ATCATCGCGG GCGCGCCCGC GGCCGAGCCG 
GCCGGTGCGC CGGCGCCGCG AGCCGCGCGG CGCGGCTTCG ACTACGCGCA GTTGATGCGG 
CGCTCGCGCG TCGCGCCGGC CGGCGCGCCC GCGCCGCGCG GCGACGGCGA ACGCCCGCGC 
GACGCGGCGA TGCCGTGGCG CGACGGCGCC GCGCCGTCGT TCGAGCGCGA TCCGGCCGCG 
CTGCCCGATG CGCTCGGCCG CGAGGCGATG GCGCGCGCGT GCGCGGGCGC CGATGCGTTC 
GTCAATCAGG TGTTCGCGCA GCGCGAGCGG GTGGTGCGCG TCGCCGAAGC GTTGGCCGCC 
GAGATCGCCG CGCTCGGCGG CGGCGACGCG TCGGGCCAGT GGGAGCAGCC TGCCGCTCGA 
CGCGGCGTTG CTGCCGGATA CGGTGCTGCA TCTCGTTCTT TCGCGTTTCG ACTTGCGGCT 
TCGGTTCGAG ACGCCGGACG CGGCGACGCG GCACTTACTC TGCACACATG GCGCGACGCT 
GCACGCGCGA CTCGACACGC TGCTCGCGCA TCACGGCGCG CCGCGCACGA TCGAGATCGA 
CGTCGGCTGA AACGCGCGCA ATCGAACCCG ACCGCGACGA TGAACACCGA GCCGATCGAA 
CTGGAACCCG CTACCGCCGA GCCGCCCGGC ATCGACACCG CGCTGCCGCT GCCCGCGTGC 
AGCGCGTTCG ACGCGGCGCT CGCGCGCATC GTCTGCGACG CGCGGCTCGC CGCCTGGCTC 
GCGCGCTTTC CGGGGCTGTC CGACTGGCGC GCGTCGGCGG GCGAGCGGCC GTGCTTCGAG 
CGCCCCGGCG TGCTCGAGCT GCGGCGCGGC GGCGCGGCCG CGCACGTCGC GATCGATCTC 
GCGGCGTTTC CGGCGCTCGA GGTCGTCGCC GCGCCCGCGC TCGACGCGCG CGGCGACGCG 
AGCCTCTCGC TGCGCGCGGC GCTCGCGGCG ACGCTGCTCG CGCCGCTCGT CGCCGCGTTC 
GCGGCGGCGG GGCTCGACGG CGTGACGGTC GGCGCGCTGC GCGCGGTGCC CGCCGCGGCG 
CTCGACGCGA CGCGCTGCAT GCTGTCGTTC GCGCTCGACG GCGCGCCGCT GCGCTGCGCG 
CTGCTCGATG CGCAAGCGCC GTGGCTCGAC GCGCTCGCGG CCCGGCTGCG CGACGAGCGG 
CGCCGCGATG CGTCAAGCGG GCTCGCCCGC GTGCGCTTGC CGGGGCGCGT GCGGCTCGGC 
ACGCGCGCGC TGCCGCTCGC GGTGCTGCGC AGCCTGCGGC CGGGCGACGT GCTGCTCGAC 
ATGGTGCCCG CCGCACTGGG CGCCGCGCGG GCGGGCCCGC TGCATGCGTG GTGGGGCGCG 
CGGCGCGCGG CCCAATGGCA CGCAACCGTT CTGATCGAGG GAACCACGAT GACGATGACC 
GAAATGCCAG ACACCGCCGA CGACCTCGAC GAGCCGATCG TCGCGGGCGA CTTGCCGGCC 
GATTCCTTGG CCGATTTTCC GGCCGATTCC CCGGCTGCAG TTCCGGCTGA ATTTCCGGCT 
GAATTTCCGG CCGACCGGGC GGGCGATCTG CCGGCCCCTT CCGCGGCTCA TTCGTCGCCC 
GGTTCGCTCG CCGGGTTGCC GGCCGGGTTG CAGGCCGACG CGCCGCCGCG CGACGCGCGG 
TACGCCGCGC CCGAGCCGGC CGATCTCGGC GAGGTCGCGC TGCCCGTGCA CGTCGAGATC 
GACACGCTGT CGCTGTCGAT CGCCGAGCTC GCCGCGCTGC GCCCGGGCTA CGTGCTCGAG 
TTGCCGCTCG CCGCGCGCGA CGTGCCGGTG CGGCTCGTCG CATACGGCCA GGCGATCGGC 
GGCGGCCGCC TCGTCGCGGT GGGCGCGCAT CTCGGCGTGC GGATCGACCG GATGGCGGGC 
GACGATGGTT CAGTTTAA 

 

Protein sequence

MSAADLRPVR IIAGAPAAEP AGAPAPRAAR RGFDYAQLMR RSRVAPAGAP APRGDGERPR 
DAAMPWRDGA APSFERDPAA LPDALGREAM ARACAGADAF VNQVFAQRER VVRVAEALAA 
EIAALGGGDA SGQWEQPAAR RGVAAGYGAA SRSFAFRLAA SVRDAGRGDA ALTLHTWRDA 
ARATRHAARA SRRAAHDRDR RRLKRAQSNP TATMNTEPIE LEPATAEPPG IDTALPLPAC 
SAFDAALARI VCDARLAAWL ARFPGLSDWR ASAGERPCFE RPGVLELRRG GAAAHVAIDL 
AAFPALEVVA APALDARGDA SLSLRAALAA TLLAPLVAAF AAAGLDGVTV GALRAVPAAA 
LDATRCMLSF ALDGAPLRCA LLDAQAPWLD ALAARLRDER RRDASSGLAR VRLPGRVRLG 
TRALPLAVLR SLRPGDVLLD MVPAALGAAR AGPLHAWWGA RRAAQWHATV LIEGTTMTMT 
EMPDTADDLD EPIVAGDLPA DSLADFPADS PAAVPAEFPA EFPADRAGDL PAPSAAHSSP 
GSLAGLPAGL QADAPPRDAR YAAPEPADLG EVALPVHVEI DTLSLSIAEL AALRPGYVLE 
LPLAARDVPV RLVAYGQAIG GGRLVAVGAH LGVRIDRMAG DDGSV