| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A0677 |
|---|
| Symbol | sctQ |
|---|
| ID | 3694380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007435 |
|---|
| Strand | - |
|---|
| Start bp | 873767 |
|---|
| End bp | 875053 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 637730931 |
|---|
| Product | type III secretion inner membrane protein SctQ |
|---|
| Protein accession | YP_335836 |
|---|
| Protein GI | 76818024 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.129749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCG AGCCGATCGA ACTGGAACCC GCTACCGCCG AGCCGCCCGG CATCGACACC
GCGCTGCCGC TGCCCGGGTG CAGCGCGTTC GACGCGGCGC TCGCGCGCAT CGTCTGCGAC
GCGCGGCTCG CCGCCTGGCT CGCGCGCTTT CCGGGGCTGT CCGACTGGCG CGCGTCGGCG
GGCGAGCGGC CGTGCTTCGA GCGCCCCGGC GTGCTCGAGC TGCGGCGCGG CGGCGCGGCC
GCGCACGTCG CGATCGATCT CGCGGCGTTT CCGGCGCTCG AGGTCGTCGC CGCGCCCGCG
CTCGACGCGC GCGGCGACGC GAGCCTCTCG CTGCGCGCGG CGCTCGCGGC GACGCTGCTC
GCGCCGCTCG TCGCCGCGTT CGCGGCGGCG GGGCTCGACG GCGTGACGGT CGGCGCGCTG
CGCGCGGTGC CCGCCGCGGC GCTCGACGCG ACGCGCTGCA TGTTGTCGTT CGCGCTCGAC
GGCGCGCCGC TGCGCTGCGC GCTGCTCGAT GCGCAAGCGC CGTGGCTCGA CGCGCTCGCG
GCCCGGCTGC GCGACGAGCG GCGCCGCGAT GCGGCAAGCG GGCTCGCCCG CGTGCGCTTG
CCGGGGCGCG TGCGGCTCGG CACGCGCGCG CTGCCGCTCG CGGTGCTGCG CAGCCTGCGG
CCGGGCGACG TGCTGCTCGA CATGGTGCCC GCCGCACTGG GCGCCGCGCG GGCGGGCCCG
CTGCATGCGT GGTGGGGCGC GCGGCGCGCG GCCCAATGGC ACGCAACCGT TCTGATCGAG
GGAACCACGA TGACGATGAC CGAAATGCCA GACACCGCCG ACGACCTCGA CGAGCCGATC
GTCGCGGGCG ACTTGCCGGC CGATTCCTTG GCCGATTTTC CGGCCGATTC CCCGGCTGCA
GTTCCGGCTG AATTTCCGGC CGACCGGGCG GGCGATCTGC CGGCCGATTC CGCGGCTCAT
TCGTCGCCCG GTTCGCTCGC CGGGTTGCAG GCCGGGTTGC CGGCCGACGC GCCGCCGCGC
GACGCGCGGT ACGCCGCGCC CGAGCCGGCC GATCTCGGCG AGGTCGCGCT GCCCGTGCAC
GTCGAGATCG ACACGCTGTC GCTGTCGATC GCCGAGCTCG CCGCGCTGCG TCCGGGCTAC
GTGCTCGAGT TGCCGCTCGC CGCGCGCGAC GTGCCGGTGC GGCTCGTCGC ATACGGCCAG
GCGATCGGCG GCGGCCGCCT CGTCGCGGTG GGCGCGCATC TCGGCGTGCG GATCGACCGG
ATGGCGGGCG ACGATGGTTC AGTTTAA
|
|---|
| Protein sequence | MNTEPIELEP ATAEPPGIDT ALPLPGCSAF DAALARIVCD ARLAAWLARF PGLSDWRASA
GERPCFERPG VLELRRGGAA AHVAIDLAAF PALEVVAAPA LDARGDASLS LRAALAATLL
APLVAAFAAA GLDGVTVGAL RAVPAAALDA TRCMLSFALD GAPLRCALLD AQAPWLDALA
ARLRDERRRD AASGLARVRL PGRVRLGTRA LPLAVLRSLR PGDVLLDMVP AALGAARAGP
LHAWWGARRA AQWHATVLIE GTTMTMTEMP DTADDLDEPI VAGDLPADSL ADFPADSPAA
VPAEFPADRA GDLPADSAAH SSPGSLAGLQ AGLPADAPPR DARYAAPEPA DLGEVALPVH
VEIDTLSLSI AELAALRPGY VLELPLAARD VPVRLVAYGQ AIGGGRLVAV GAHLGVRIDR
MAGDDGSV
|
|---|
| |