| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A2196 |
|---|
| Symbol | |
|---|
| ID | 4905515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | - |
|---|
| Start bp | 2145158 |
|---|
| End bp | 2146468 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640145301 |
|---|
| Product | type III secretion system apparatus protein YscQ/HrcQ |
|---|
| Protein accession | YP_001076229 |
|---|
| Protein GI | 126458111 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.583372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCG AGCCGATCGA ACTGGAACCC GCTACCGCCG AGCCGCCCGG CATCGACACC
GCGCTGCCGC TGCCCGCGTG CAGCGCGTTC GACGCGGCGC TCGCGCGCAT CGTCTGCGAC
GCGCGGCTCG CCGCCTGGCT CGCGCGCTTT CCGGGGCTGT CCGACTGGCG CGCGTCGGCG
GGCGAGCGGC CGTGCTTCGA GCGCCCCGGC GTGCTCGAGC TGCGGCGCGG CGGCGCGGCC
GCGCACGTCG CGATCGATCT CGCGGCGTTT CCGGCGCTCG AGGTCGTCGC CGCGCCCGCG
CTCGACGCGC GCGGCGACGC GAGCCTCTCG CTGCGCGCGG CGCTCGCGGC GACGCTGCTC
GCGCCGCTCG TCGCCGCGTT CGCGGCGGCG GGGCTCGACG GCGTGACGGT CGGCGCGCTG
CGCGCGGTGC CCGCCGCGGC GCTCGACGCG ACGCGCTGCA TGCTGTCGTT CGCGCTCGAC
GGCGCGCCGC TGCGCTGCGC GCTGCTCGAT GCGCAAGCGC CGTGGCTCGA CGCGCTCGCG
GCCCGGCTGC GCGACGAGCG GCGCCGCGAT GCGGCAAGCG GGCTCGCCCG CGTGCGCTTG
CCGGGGCGCG TGCGGCTCGG CACGCGCGCG CTGCCGCTCG CGGTGCTGCG CAGCCTGCGG
CCGGGCGACG TGCTGCTCGA CATGGTGCCC GCCGCACTGG GCGCCGCGCG GGCGGGTCCG
CTGCATGCGT GGTGGGGCGC GCGGCGCGCG GCCCAATGGC ACGCAACCGT TCTGATCGAG
GGAACCACGA TGACGATGAC CGAAATGCCA GACACCGCCG ACGACCTCGA CGAGCCGATC
GTCGCGGGCG ACTTGCCGGC CGATTCCTTG GCCGATTTTC CGGCCGATTC CCCGGCTGCA
GTTCCGGCTG CAGTTCCGGC TGCAGTTCCG GCTGAATTTC CGGCCGACCG GGCGGGCGAT
CTGCCGGCCG ATTCCGCGGC TCATTCGTCG CCCGGTTCGC TCGCCGGGTT GCAGGCCGGG
TTGCCGGCCG ACGCGCCGCC GCGCGACGCG CGGTACGCCG CGCCCGAGCC GGCCGATCTC
GGCGAGGTCG CGCTGCCCGT GCACGTCGAG ATCGACACGC TGTCGCTGTC GATCGCCGAG
CTCGCCGCGC TGCGTCCGGG CTACGTGCTC GAGTTGCCGC TCGCCGCGCG CGACGTGCCG
GTGCGGCTCG TCGCATACGG CCAGGCGATC GGCGGCGGCC GCCTCGTCGC GGTGGGCGCG
CATCTCGGCG TGCGGATCGA CCGGATGGCG GGCGACGATG GTTCAGTTTA A
|
|---|
| Protein sequence | MNTEPIELEP ATAEPPGIDT ALPLPACSAF DAALARIVCD ARLAAWLARF PGLSDWRASA
GERPCFERPG VLELRRGGAA AHVAIDLAAF PALEVVAAPA LDARGDASLS LRAALAATLL
APLVAAFAAA GLDGVTVGAL RAVPAAALDA TRCMLSFALD GAPLRCALLD AQAPWLDALA
ARLRDERRRD AASGLARVRL PGRVRLGTRA LPLAVLRSLR PGDVLLDMVP AALGAARAGP
LHAWWGARRA AQWHATVLIE GTTMTMTEMP DTADDLDEPI VAGDLPADSL ADFPADSPAA
VPAAVPAAVP AEFPADRAGD LPADSAAHSS PGSLAGLQAG LPADAPPRDA RYAAPEPADL
GEVALPVHVE IDTLSLSIAE LAALRPGYVL ELPLAARDVP VRLVAYGQAI GGGRLVAVGA
HLGVRIDRMA GDDGSV
|
|---|
| |