Gene VIBHAR_01727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_01727 
Symbol 
ID5556049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp1732259 
End bp1733227 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content47% 
IMG OID640907218 
Producttype III secretion system protein 
Protein accessionYP_001444923 
Protein GI156974016 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02551] type III secretion system apparatus protein YscQ/HrcQ 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATAT TAGATTTCCC AAAGGTCGAG CCTTCAAGCA TCGCGCTCAG TAATCAACTG 
TGCGCAAAAC AGTGTCACTT TCAAGATAGT CAGAGCAATA GCTTATCGGT CACGCTTGGC 
CAAAAGCCGG AGTTTTCTGG TTATCGTTTA ACGCTACTCA TCGGTGGACA AACCATTCAA 
ATCGATTTCA GCGGTGAGCA ATTACAACAA TGGTTGCATG GCATTCTTGA CTCGACGGCA 
TTTGAATCAC TGCCAAACTC TTTGCAATTG GCGTTGCTCA GTAGCCAAAT TGAGCCCTAC 
ACCGACATGA TTAAGCGCTT ATTTGGACAA CTTCCGGTAT TGAGCAAGCT GCAAGTTCAT 
GAGCAACCCG CATCAGAAGA AAACGTGTTG ATGCTCACCA TCAATCGTGA TGATGTTTCT 
CTTAGCCTGT GGGTCCATGA AGGTCGGGAT GTGTTGATTG ACACTCTGCC ACAAGCTCCC 
TCTTACCTGA GCCAAAACAT CGCACTGCCC TTCTGGTTGA GCTTTGGCAA AACACGTTTG 
GCGCTCAGTC AATTTGAACA ACTTGAACTG GGCGATGTGG TGTTTTTCGA CGATTGCTAC 
ATCGCGCAAC ACCAAGTGCT GCTTCAGGTC TCCAATCACA ACCTTTGGCG ATGCCAACTC 
GACAATACGA CACTCCATAT CCAAGAAAAA GAAACCAATA TGAACGATAT CAACAGCTCT 
GAAGCACTGA CCGACCACCA GCAATTGCCA ATTGAACTGA CTTTCGATGT TGGTCAGCAA 
ACCATTACTT TAGAACAGCT TAACGCGCTG CAACCGGGTT TCACCTTTGA GCTTAACCAG 
CCAATTTCTA ACCCAGTCAC CATGCGAGCA AACGGCAAAA TTATTGGTGA ATGCGAACTA 
GTGAACATTA ATGAACGCTT GGGTGTCCGC GTTCTCGAAC TGTTTGGCGG CAGTCAGGAG 
CCAGCATGA
 
Protein sequence
MMILDFPKVE PSSIALSNQL CAKQCHFQDS QSNSLSVTLG QKPEFSGYRL TLLIGGQTIQ 
IDFSGEQLQQ WLHGILDSTA FESLPNSLQL ALLSSQIEPY TDMIKRLFGQ LPVLSKLQVH 
EQPASEENVL MLTINRDDVS LSLWVHEGRD VLIDTLPQAP SYLSQNIALP FWLSFGKTRL 
ALSQFEQLEL GDVVFFDDCY IAQHQVLLQV SNHNLWRCQL DNTTLHIQEK ETNMNDINSS 
EALTDHQQLP IELTFDVGQQ TITLEQLNAL QPGFTFELNQ PISNPVTMRA NGKIIGECEL 
VNINERLGVR VLELFGGSQE PA