| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003363 |
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| Symbol | |
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| ID | 8557096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1920458 |
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| End bp | 1921426 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646406458 |
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| Product | type III secretion inner membrane protein YscQ |
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| Protein accession | YP_003285988 |
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| Protein GI | 262394134 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCGT TAACGATACC CAAAGTCGAT TCAGACAGTA TTGCGCTCAG TAATCAACTT
TGTGCAAAGC AATGCCATTT CCAAGGGGCT GATGGTCAGA GCGTATCGAT TACTGTTTCT
CAAATCCCTT CATTTGAAGG ATTCCGTTTA ACCACGTTGA TTGGAGGGCA AACGATCCAA
GTGGATTTTT GTCGTGCGCA ACTCCAGAAA TGGCTTGAGT CTACTCTGAA TGCCACTGCA
TTCGAGTCAC TGCCCAACTC GCTCCAGTTA GCACTTTTGA GTTCTCAGAT TGAACCGCAT
AGTGATGCAT TCAAAGCACT ATTTGGTCAG TTGCCCATTC TTAGCCAGTT ACAACCGTTA
GAGTCGAGCC AAGTTCAAGA GCATACCTTG ATGTTAACCC TCAATAAACC TAACGGCTCT
CTTTGTTTGT GGGTTAGCGA AGGATCAGAC GTGTTGTTGG ATGCGCTACC AAACAGCGCT
GCTCTACAAG CTCGACACCT CGCTTTACCT GTGTGGTTAA GTCTTGGAAG GACCCATTTG
ACGTTAAGCG AATTTAATTC GCTCGAGCTG GGAGATGTGA TCTTTTTTGA CGATGGTTAC
ATCGCCAAGC AACAAGCCAT TTTTCAAGTA TCTAACCAGA ATCTCTGGCG CTGCCAGCTA
GATGACCAAA CTCTTCACAT TATTGAAAAA GAAACCAATA TGAATGACGT AAACACTTCA
GAAATGTTAA CCGACCACCA GCAACTGCCT GTGGAACTCA CGTTTGATAT CGGCCATCAA
ACCATCACGC TAGAGCAGCT TAACCAGCTT CAGCCAGGGT ACGTATTCGA GCTAAACCAG
CCTGTATCTA AGCCGGTAAC ATTGCGTGCC AACGGCAAAA TCATTGGTGA GTGTGAACTG
GTTAATGTTA ACGAACATTT AGGTGTGCGC GTACTGGAGC TGTTCGGTGG CACACAGGAG
CCAGCATGA
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| Protein sequence | MTPLTIPKVD SDSIALSNQL CAKQCHFQGA DGQSVSITVS QIPSFEGFRL TTLIGGQTIQ
VDFCRAQLQK WLESTLNATA FESLPNSLQL ALLSSQIEPH SDAFKALFGQ LPILSQLQPL
ESSQVQEHTL MLTLNKPNGS LCLWVSEGSD VLLDALPNSA ALQARHLALP VWLSLGRTHL
TLSEFNSLEL GDVIFFDDGY IAKQQAIFQV SNQNLWRCQL DDQTLHIIEK ETNMNDVNTS
EMLTDHQQLP VELTFDIGHQ TITLEQLNQL QPGYVFELNQ PVSKPVTLRA NGKIIGECEL
VNVNEHLGVR VLELFGGTQE PA
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