| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4839 |
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| Symbol | |
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| ID | 4451311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008543 |
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| Strand | + |
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| Start bp | 1827036 |
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| End bp | 1828190 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 639696895 |
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| Product | type III secretion system apparatus protein YscQ/HrcQ |
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| Protein accession | YP_838466 |
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| Protein GI | 116692933 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0073947 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0012825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCCTGCGC TGTTCCTGAC GAATGCCGAC GCCGGCGACG CCGCGAACCG GGCCCTGCCC
GCTGCTTCCC CGCCGCCCGC CGCCGCGCCG GCCGCGGTCG CGCTCGACGC GTCGCCCTAC
CTGCCGCGCC TGTCCGCCGC CGCCGCGCGC GGGCTGTCGC ATGCGTACGG CGCAACCGGC
GCCGTCCCGG TCACGCTCGG CGAGCATGCG TACGAGGTGC GCTGGCGCGT CGACGCCGAG
CCGGCCACCG ATGCGCACGC ATACCGCTTC GTCGTCGGCC CGGCCGCCGG CACGCTGTGG
ATCGACCCGC TCGCGGAAGC CGAATGGCTG GCCGATGCGG CCGACCCGGC GGTGCCCGCC
GTGATCCGCG CGGCGCTGCT CGCCGATCTG TGCGCGCCGC TCACGGCCGT GCTGCAGGCC
GCGACGCGGC AGCGCGTCGA ACTGCTGCCG CCGCCCGACG GCGTGCCGGC CTGGCATGCG
TCGCCTGCCG CGCTGCGGTT CGAGTTGCGG CGCGCCGACG CCACGTGGCG CTGCCACGGC
GCACTGCTGT TCGACGCGCC GGATGCGCTG GCCGTGTTCT TCGCGGCCGC GCCGGCCGCG
CTCGCCGACG CGCGCGCGGC CTATGCGAAC CTGCCGGTGC CGCTCGTGTT CGAGATCGGC
CGCACCGAGC TGACGACGGC CGAGCTGGCC GACGTGGTCG GCGGCGACAT CATCGCGATC
GAGCGCTGGC AGGCGCACGA GCAGAACCTG CTGTGCGTCG CGCGGCTGCC GGCCGCGCCG
GCATGGGAGA TCACCGGGCG GCCGTCGGGC AACCGGCTGA CCGTCGAACG AATCAGGGAG
ATGCCATTGG AACCGACCCG CACCGACTCC GCGCCGCCGA CGACGCACGA CGCGCCGCCC
GCCGACGTAC CGCGCTCGCT CGACGGCCTC GCGGTCGACC TGCGCTTCGA GCTGCCGCCC
ACGTCGATGC CGTTGGGCGA GCTGAGCGCG CTGCAGCCGG GCGCCGTGAT CGAGCTGCAA
CAGGGAATCA ACCAGAGCGT GATCCATCTC GTCGCGAACG GGATGCTGAT CGGCACCGGC
CACCTGATCG CGGTCGGCCA GAAACTCGGC GTGCGCGTCG TCACGCTGAC GCAACCCGCG
CCGCGCGAGC GCTGA
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| Protein sequence | MPALFLTNAD AGDAANRALP AASPPPAAAP AAVALDASPY LPRLSAAAAR GLSHAYGATG
AVPVTLGEHA YEVRWRVDAE PATDAHAYRF VVGPAAGTLW IDPLAEAEWL ADAADPAVPA
VIRAALLADL CAPLTAVLQA ATRQRVELLP PPDGVPAWHA SPAALRFELR RADATWRCHG
ALLFDAPDAL AVFFAAAPAA LADARAAYAN LPVPLVFEIG RTELTTAELA DVVGGDIIAI
ERWQAHEQNL LCVARLPAAP AWEITGRPSG NRLTVERIRE MPLEPTRTDS APPTTHDAPP
ADVPRSLDGL AVDLRFELPP TSMPLGELSA LQPGAVIELQ QGINQSVIHL VANGMLIGTG
HLIAVGQKLG VRVVTLTQPA PRER
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