| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4736 |
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| Symbol | |
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| ID | 6181014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1858568 |
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| End bp | 1859713 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641684495 |
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| Product | type III secretion system apparatus protein YscQ/HrcQ |
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| Protein accession | YP_001811406 |
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| Protein GI | 172063755 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.458134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.482732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTGCGC TGTCCCTGAC GAATGCCGAC GCCGGCGACG CCGCGAACCG GGCTACGCCC
GCCGCCGCCG CCCCGGCCGC CGCCGCGGTC GCGCTCGACG CGTCGCCCTA TCTGCCGCGC
CTGTCCGCCG CCGCCGCGCG CGGGCTGTCG CACGTGTACG GCGCGACGGC CGCGGTTCCG
GTCACGCTCG GCGAACACGC GTACGAGGTG CGCTGGCGCG TCGATGCCGA ACCGGCCGCC
GACGCGCATG CGTACCGCTT CGTCATCGGC CCGGCCGCCG GCACGCTATG GATCGATCCG
CTCGCGGAAC ACGAGTGGCT CGGCGACGCA GCCGACCCGG CCGTGCCGGC CGTGATCCGC
GCGGCGCTGC TCGCCGATCT CGCCGCGCCG CTCACCGCCG CGCTGCAGGC CGCGACGCGG
CAGCGCGTGG AATTGCTGCC ACCGCCCGCG AGCGTGCCCG CATGGCGCAC CGCGCCGGCC
GCACTGCGCT TCGAGCTGCG TCGCGCCGAC GGCGCGTGGC GCTGTCATGG CGCGCTGCTG
TTCGATGCAC CGGACGCGCT CGCGGTGTTC TTCGCGACGC CGGCGGCCAC GCGAGCCGAT
ACGCGCGCCG CGTACGCGGG CCTGCCGGTG CCGCTGGTAT TCGAGATCGG CCGGACCGAG
CTGACGATGG CCGAGCTGGC CGACGTCGTC GGCGGCGACA TCATCGCGAT CGAGCACTGG
CGCGCGCACG AGCAGAACCT GCTGTGCGTC GCGCGGGTGC CGGCCGCGCC GGCGTGGGAA
ATCACCGGAC GGCCGTCGGG CAACCGGCTG ACCGTCGAAC GAATCAGGGA GATGCCTTTG
GAACCGACCC GCACCGATAC CCCGTCCGTG ACCACGCACG ACGCGTCGGC CGACGATGCG
CCGCGCTCGC TCGACAGCCT CGCGGTCGAC CTGCGTTTCG AGTTGCCGCC CACATCGATC
CCGCTTGGCG AACTCGGCAC GCTGCAGCCC GGCGCGGTGA TCGAACTGCA GCAAGGGATC
AACCAGAGCG TGATCCATCT CGTCGCGAAC GGGATGCTGA TCGGCACCGG CCAGCTGATC
GCGGTCGGCC AGAAGCTCGG CGTGCGCGTC GTCACGCTGA CGCAACCCGC GCCGCGCGAG
CGCTGA
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| Protein sequence | MPALSLTNAD AGDAANRATP AAAAPAAAAV ALDASPYLPR LSAAAARGLS HVYGATAAVP
VTLGEHAYEV RWRVDAEPAA DAHAYRFVIG PAAGTLWIDP LAEHEWLGDA ADPAVPAVIR
AALLADLAAP LTAALQAATR QRVELLPPPA SVPAWRTAPA ALRFELRRAD GAWRCHGALL
FDAPDALAVF FATPAATRAD TRAAYAGLPV PLVFEIGRTE LTMAELADVV GGDIIAIEHW
RAHEQNLLCV ARVPAAPAWE ITGRPSGNRL TVERIREMPL EPTRTDTPSV TTHDASADDA
PRSLDSLAVD LRFELPPTSI PLGELGTLQP GAVIELQQGI NQSVIHLVAN GMLIGTGQLI
AVGQKLGVRV VTLTQPAPRE R
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