| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03405 |
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| Symbol | hrpD1 |
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| ID | 6303596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 69741 |
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| End bp | 70562 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642637390 |
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| Product | type III secretion apparatus protein, YscQ/HrcQ family |
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| Protein accession | YP_001911275 |
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| Protein GI | 188574346 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGATACCG GCCAGATGGA TTTGCGGATT GCTGCGCGCG ACGGCCTGGC GCTGTTATTG
AACGAGGACG ACGACGCACT ACGCGTTTCG ATCGCGGGAA TGTTACTGGC CGATCATCTG
GGCGCGTTTG CGCCGCTCGG CCTGGCTGCT GCCGAGGTGA TCGCCTTCAA GCGCGATGCA
ACGCCAGACG ACTGCCACGG CATCGGTATG ACACTGGGCG ATCTCGATGC AATTGCGCTG
AAGGCGAGCG CGTCGCTGCT GGACACGCTG CAGGCCGCAG TTGACGGACT TGCGGCGCCC
GCGCAGCTGC CAGCCTGGCT GGCTGCACTG CGCGTCAACA CGCGCCTGCG CATCGGCGGG
CGCACCGCAT CAGCTGCATT GCTGCAATCG CTGCGACCTG GCGATGTCTT GCTGCATTGC
ACGGCTGCGG CTGCGCTCAC CAGCGGCGAA GTGCTTTGGG GGATCGCTGG AGGCGCGGTA
TTGCGTGCGG CGGTGCGCTT GAACATGCAA CAGATGATTC TGGAGGCCAG CCCCACAATG
CAGCACGATA CGTTTGAGCC TGAAGTCGCG CCGTCCACCA GCAACGTGGC GGAACTGGAA
CTGCCGGTGC AACTGGAAGT GGATCAACTT GCGCTGTCTC TATCGACCTT GTCGGGTTTA
CAGCCCGGGC AGATCCTGGA GTTGTCGGTG CCGGTCGATC AAGCCGACAT CCGTCTGGTC
GTTTACGGCC AGACCATCGG CACCGGCAGG TTGCTGGCAG TGGGCGAACA TCTTGGTGTG
CAGATCCTCA GCATGTCGGA GAGCACGCAT GCAGATGCCT GA
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| Protein sequence | MDTGQMDLRI AARDGLALLL NEDDDALRVS IAGMLLADHL GAFAPLGLAA AEVIAFKRDA
TPDDCHGIGM TLGDLDAIAL KASASLLDTL QAAVDGLAAP AQLPAWLAAL RVNTRLRIGG
RTASAALLQS LRPGDVLLHC TAAAALTSGE VLWGIAGGAV LRAAVRLNMQ QMILEASPTM
QHDTFEPEVA PSTSNVAELE LPVQLEVDQL ALSLSTLSGL QPGQILELSV PVDQADIRLV
VYGQTIGTGR LLAVGEHLGV QILSMSESTH ADA
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