More than 300 homologs were found in PanDaTox collection
for query gene Tpau_3606 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_3606  short-chain dehydrogenase/reductase SDR  100 
 
 
278 aa  536  1e-151  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.543752  n/a   
 
 
-
 
NC_013739  Cwoe_5919  short-chain dehydrogenase/reductase SDR  48.44 
 
 
295 aa  205  8e-52  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0690  short chain dehydrogenase  42.49 
 
 
292 aa  183  3e-45  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0965776 
 
 
-
 
NC_009338  Mflv_0217  short chain dehydrogenase  42.12 
 
 
286 aa  181  2e-44  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.743608  normal 
 
 
-
 
NC_009077  Mjls_0518  short chain dehydrogenase  45.81 
 
 
287 aa  177  2e-43  Mycobacterium sp. JLS  Bacteria  normal  0.693984  normal 
 
 
-
 
NC_008146  Mmcs_0528  short chain dehydrogenase  45.81 
 
 
287 aa  177  2e-43  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0540  short chain dehydrogenase  45.81 
 
 
287 aa  177  2e-43  Mycobacterium sp. KMS  Bacteria  normal  0.0506548  normal 
 
 
-
 
NC_013510  Tcur_3722  short-chain dehydrogenase/reductase SDR  41.57 
 
 
267 aa  176  5e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  0.848764  n/a   
 
 
-
 
NC_009565  TBFG_11893  short chain dehydrogenase  40.15 
 
 
286 aa  161  9e-39  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.361469 
 
 
-
 
NC_008726  Mvan_2345  short chain dehydrogenase  48.47 
 
 
297 aa  155  6e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.190376  hitchhiker  0.00770319 
 
 
-
 
NC_013441  Gbro_3792  short-chain dehydrogenase/reductase SDR  39.62 
 
 
290 aa  154  1e-36  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3561  short chain dehydrogenase  41.96 
 
 
276 aa  149  5e-35  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0045  short-chain dehydrogenase/reductase SDR  40.48 
 
 
297 aa  147  2.0000000000000003e-34  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0458  short-chain dehydrogenase/reductase SDR  38.91 
 
 
257 aa  127  1.0000000000000001e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.706164 
 
 
-
 
NC_009719  Plav_0548  short-chain dehydrogenase/reductase SDR  39.8 
 
 
261 aa  127  2.0000000000000002e-28  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0808  short-chain dehydrogenase/reductase SDR  40.2 
 
 
252 aa  125  1e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1386  short-chain dehydrogenase/reductase SDR  37.44 
 
 
251 aa  124  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6034  short-chain dehydrogenase/reductase SDR  37.44 
 
 
249 aa  124  2e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311099  normal  0.357873 
 
 
-
 
NC_008544  Bcen2424_6443  short-chain dehydrogenase/reductase SDR  37.44 
 
 
259 aa  124  2e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0150364  normal 
 
 
-
 
NC_013501  Rmar_1462  short-chain dehydrogenase/reductase SDR  37.05 
 
 
266 aa  122  7e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  30.8 
 
 
264 aa  121  9.999999999999999e-27  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  30.4 
 
 
264 aa  119  3.9999999999999996e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1541  short-chain dehydrogenase/reductase SDR  38.58 
 
 
255 aa  119  7.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.111492  normal 
 
 
-
 
NC_008392  Bamb_5653  short-chain dehydrogenase/reductase SDR  36.56 
 
 
251 aa  118  9e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.383425 
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  30.8 
 
 
264 aa  118  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  30.8 
 
 
264 aa  118  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  30.8 
 
 
264 aa  118  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  30.8 
 
 
264 aa  118  9.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010557  BamMC406_6401  short-chain dehydrogenase/reductase SDR  36.56 
 
 
249 aa  117  9.999999999999999e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.476786  normal  0.058074 
 
 
-
 
NC_009565  TBFG_12242  short chain dehydrogenase  39.3 
 
 
592 aa  117  9.999999999999999e-26  Mycobacterium tuberculosis F11  Bacteria  normal  0.0208017  normal  0.29752 
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  30.8 
 
 
264 aa  117  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  30.8 
 
 
264 aa  117  1.9999999999999998e-25  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_011004  Rpal_0721  2-hydroxycyclohexanecarboxyl-CoA dehydrogenase  38.81 
 
 
255 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1032  short-chain dehydrogenase/reductase SDR  38.07 
 
 
255 aa  116  3.9999999999999997e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  30.4 
 
 
264 aa  116  5e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4853  short-chain dehydrogenase/reductase SDR  34.02 
 
 
248 aa  116  5e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.154391  normal  0.241568 
 
 
-
 
NC_014212  Mesil_1171  short-chain dehydrogenase/reductase SDR  37.09 
 
 
238 aa  115  6e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.399765 
 
 
-
 
NC_008146  Mmcs_3311  short chain dehydrogenase  40.31 
 
 
588 aa  115  7.999999999999999e-25  Mycobacterium sp. MCS  Bacteria  normal  0.768628  n/a   
 
 
-
 
NC_009077  Mjls_3322  short chain dehydrogenase  40.31 
 
 
588 aa  115  7.999999999999999e-25  Mycobacterium sp. JLS  Bacteria  normal  normal  0.178301 
 
 
-
 
NC_008705  Mkms_3373  short chain dehydrogenase  40.31 
 
 
588 aa  115  7.999999999999999e-25  Mycobacterium sp. KMS  Bacteria  normal  0.855673  normal  0.12205 
 
 
-
 
NC_013441  Gbro_4339  short-chain dehydrogenase/reductase SDR  40.91 
 
 
588 aa  115  8.999999999999998e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1543  3-hydroxybutyrate dehydrogenase  35.6 
 
 
260 aa  114  1.0000000000000001e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_2306  short-chain dehydrogenase/reductase SDR  36.4 
 
 
286 aa  114  1.0000000000000001e-24  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.930868  n/a   
 
 
-
 
NC_012803  Mlut_09850  short-chain dehydrogenase of unknown substrate specificity  40.24 
 
 
297 aa  115  1.0000000000000001e-24  Micrococcus luteus NCTC 2665  Bacteria  normal  0.414551  n/a   
 
 
-
 
NC_010338  Caul_0159  short-chain dehydrogenase/reductase SDR  35.09 
 
 
249 aa  114  1.0000000000000001e-24  Caulobacter sp. K31  Bacteria  normal  0.410897  normal  0.168063 
 
 
-
 
NC_010512  Bcenmc03_6840  short-chain dehydrogenase/reductase SDR  38.83 
 
 
254 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0520  short-chain dehydrogenase/reductase SDR  39.58 
 
 
602 aa  114  2.0000000000000002e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1769  short-chain dehydrogenase/reductase SDR  38.05 
 
 
253 aa  114  2.0000000000000002e-24  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.145372 
 
 
-
 
NC_011145  AnaeK_1565  short-chain dehydrogenase/reductase SDR  37.1 
 
 
286 aa  113  3e-24  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2737  short-chain dehydrogenase/reductase SDR  37.95 
 
 
245 aa  113  3e-24  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2457  short-chain dehydrogenase/reductase SDR  32.03 
 
 
291 aa  113  4.0000000000000004e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0300911  n/a   
 
 
-
 
NC_010087  Bmul_5635  short-chain dehydrogenase/reductase SDR  35.16 
 
 
247 aa  113  4.0000000000000004e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7115  Short-chain dehydrogenase/reductase SDR  35.98 
 
 
253 aa  112  5e-24  Burkholderia sp. 383  Bacteria  normal  normal  0.963222 
 
 
-
 
NC_009439  Pmen_2896  short-chain dehydrogenase/reductase SDR  36.44 
 
 
240 aa  112  5e-24  Pseudomonas mendocina ymp  Bacteria  normal  0.148916  normal 
 
 
-
 
NC_011726  PCC8801_0488  short-chain dehydrogenase/reductase SDR  33.77 
 
 
244 aa  112  6e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007336  Reut_C6108  Short-chain dehydrogenase/reductase SDR  36.65 
 
 
255 aa  112  6e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0501  short-chain dehydrogenase/reductase SDR  33.77 
 
 
244 aa  112  6e-24  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00365065 
 
 
-
 
NC_010511  M446_1704  short-chain dehydrogenase/reductase SDR  35.48 
 
 
327 aa  112  7.000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.151565  normal 
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  30 
 
 
264 aa  112  7.000000000000001e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
NC_007950  Bpro_5564  short-chain dehydrogenase/reductase SDR  34.41 
 
 
250 aa  112  8.000000000000001e-24  Polaromonas sp. JS666  Bacteria  normal  0.0387947  normal 
 
 
-
 
NC_007413  Ava_2965  Short-chain dehydrogenase/reductase SDR  31.73 
 
 
293 aa  112  9e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4962  short-chain dehydrogenase/reductase SDR  32.4 
 
 
290 aa  112  9e-24  'Nostoc azollae' 0708  Bacteria  unclonable  0.00000187582  n/a   
 
 
-
 
NC_009427  Saro_3667  short-chain dehydrogenase/reductase SDR  36.32 
 
 
259 aa  112  9e-24  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3738  short-chain dehydrogenase/reductase SDR  39.89 
 
 
245 aa  111  1.0000000000000001e-23  Pseudomonas putida F1  Bacteria  normal  0.880926  normal 
 
 
-
 
NC_007413  Ava_2596  Short-chain dehydrogenase/reductase SDR  31.37 
 
 
287 aa  111  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.7335  normal 
 
 
-
 
NC_013411  GYMC61_0353  short-chain dehydrogenase/reductase SDR  33.73 
 
 
262 aa  111  1.0000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010338  Caul_4845  short-chain dehydrogenase/reductase SDR  35.81 
 
 
252 aa  111  1.0000000000000001e-23  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1226  short-chain dehydrogenase/reductase SDR  36.56 
 
 
247 aa  112  1.0000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  0.340445  normal  0.365193 
 
 
-
 
NC_007412  Ava_C0112  NAD-dependent epimerase/dehydratase  32.16 
 
 
244 aa  110  2.0000000000000002e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1295  short chain dehydrogenase  37.63 
 
 
602 aa  110  2.0000000000000002e-23  Ralstonia pickettii 12J  Bacteria  normal  0.101432  normal  0.699766 
 
 
-
 
NC_010087  Bmul_5439  short-chain dehydrogenase/reductase SDR  36.12 
 
 
249 aa  110  2.0000000000000002e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.012898 
 
 
-
 
NC_011884  Cyan7425_3728  short-chain dehydrogenase/reductase SDR  34.97 
 
 
241 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1643  short-chain dehydrogenase/reductase SDR  35.83 
 
 
286 aa  110  2.0000000000000002e-23  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2740  short-chain dehydrogenase/reductase SDR  36.65 
 
 
243 aa  110  2.0000000000000002e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01927  putative oxidoreductase  33.62 
 
 
252 aa  110  2.0000000000000002e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.160278  n/a   
 
 
-
 
NC_010831  Cphamn1_0180  3-oxoacyl-(acyl-carrier-protein) reductase  31.08 
 
 
245 aa  110  2.0000000000000002e-23  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.00307059  normal 
 
 
-
 
NC_009943  Dole_1249  short-chain dehydrogenase/reductase SDR  34.14 
 
 
273 aa  111  2.0000000000000002e-23  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0626824  n/a   
 
 
-
 
NC_013169  Ksed_21900  short-chain dehydrogenase of unknown substrate specificity  38.56 
 
 
272 aa  110  3e-23  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.509976  normal 
 
 
-
 
NC_007760  Adeh_3205  short-chain dehydrogenase/reductase SDR  35.87 
 
 
244 aa  110  3e-23  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1359  short chain dehydrogenase  37.63 
 
 
602 aa  110  3e-23  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3104  short-chain dehydrogenase/reductase SDR  36.68 
 
 
252 aa  110  3e-23  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01006  short-chain alcohol dehydrogenase-like protein  37 
 
 
255 aa  110  3e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1192  oxidoreductase, short chain dehydrogenase/reductase family  27.89 
 
 
255 aa  110  4.0000000000000004e-23  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3131  short-chain dehydrogenase/reductase SDR  37.5 
 
 
245 aa  109  5e-23  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  31.51 
 
 
231 aa  109  6e-23  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3307  short-chain dehydrogenase/reductase SDR  39.79 
 
 
275 aa  109  6e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_04660  2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase  40.84 
 
 
261 aa  109  6e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  31.51 
 
 
231 aa  109  6e-23  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_008228  Patl_2140  short-chain dehydrogenase/reductase SDR  34.36 
 
 
254 aa  109  6e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1562  short-chain dehydrogenase/reductase SDR  37.66 
 
 
275 aa  108  7.000000000000001e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0498761  n/a   
 
 
-
 
NC_010531  Pnec_0235  short-chain dehydrogenase/reductase SDR  33.87 
 
 
244 aa  108  8.000000000000001e-23  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2100  short-chain dehydrogenase/reductase SDR  35.83 
 
 
250 aa  108  9.000000000000001e-23  Acidovorax sp. JS42  Bacteria  normal  0.0527344  normal 
 
 
-
 
NC_007498  Pcar_0903  acetoin reductase, putative  33.19 
 
 
269 aa  108  1e-22  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1991  short chain dehydrogenase/reductase family oxidoreductase  37.56 
 
 
251 aa  107  2e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  0.371693  n/a   
 
 
-
 
NC_009674  Bcer98_2831  short-chain dehydrogenase/reductase SDR  29.2 
 
 
264 aa  107  2e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1390  short chain dehydrogenase/reductase family oxidoreductase  37.56 
 
 
251 aa  107  2e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  0.399104  n/a   
 
 
-
 
NC_009079  BMA10247_A2278  short chain dehydrogenase/reductase family oxidoreductase  37.56 
 
 
251 aa  107  2e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2238  short-chain dehydrogenase/reductase SDR  34.87 
 
 
317 aa  107  2e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3650  short-chain dehydrogenase/reductase SDR  29.84 
 
 
256 aa  107  2e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3043  short chain dehydrogenase/reductase family oxidoreductase  37.56 
 
 
251 aa  107  2e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
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