| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2140 |
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| Symbol | |
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| ID | 4173395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2589360 |
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| End bp | 2590124 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055148 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_661712 |
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| Protein GI | 109898457 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGACA ACAGTGTTGC TGGAAAGCAT ATATTAATTA CAGGTGGGGC CTCAGGAATT
GGGGCCGAGT CTGCTTTGTT ACTAAGTAAA CGAGGGGCCA GTATCACACT GGCAGATCTA
AACGACGTCG ATGGCAATGC TCTAGCTCAA CGCATCTGTG ATGAAGGCGG TCAAGCGCGT
TTCGTTAAAG TAGATGTCAG CGAAAGTGCA TCCGTTGCGG CACTTTTTGA TTCGGCCATT
GATGAATTAG GTAATATCGA TGTGTTGATA AACAATGCTG GCATTGATCA CGATCCTAAA
TTTATGCTGG AAATAGACGA CGCTACCTTT CATAAAAATA TCGCGGTGAA TGTGAATGGT
GTGTGGTTTT GCATGAAGCA GGCATTGGCT CATATGATGC AAAATGGCGG TGGCCATGTG
ATCAATATCT CATCTGTGGC AGGTATTCGC GCCGCTCCCA CGTTATCAGC CTATAGCGCA
GCGAAACATG CAGTCGTGGG GTTAACCAAG TCAGCAGCGG TGGAATATGC CCGGCACAAT
ATACGTTTTA ATGCTGTCTG CCCCAGCTTC ATTCGCACCC CTATGGTGGA AAATGTTTTG
TCTAAATTAG ATGAACGTGG GCAAAAAGCA CTCGTCAAGG CTAATCCAAT GAAACGCCTT
GGAGAGCCAC AAGAAGTGGC TGGCGCGATT GCTTGGTTAT GTACAGCAGA GTCAAGTTTT
ATGACCGGCC ATACCGTAGT ACTCGACGGT GGTATGACTG CGTAA
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| Protein sequence | MSDNSVAGKH ILITGGASGI GAESALLLSK RGASITLADL NDVDGNALAQ RICDEGGQAR
FVKVDVSESA SVAALFDSAI DELGNIDVLI NNAGIDHDPK FMLEIDDATF HKNIAVNVNG
VWFCMKQALA HMMQNGGGHV INISSVAGIR AAPTLSAYSA AKHAVVGLTK SAAVEYARHN
IRFNAVCPSF IRTPMVENVL SKLDERGQKA LVKANPMKRL GEPQEVAGAI AWLCTAESSF
MTGHTVVLDG GMTA
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