Gene Mmcs_3311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmcs_3311 
Symbol 
ID4112143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium sp. MCS 
KingdomBacteria 
Replicon accessionNC_008146 
Strand
Start bp3507811 
End bp3509577 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content70% 
IMG OID638032443 
Productshort chain dehydrogenase 
Protein accessionYP_640474 
Protein GI108800277 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities
[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.768628 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACGAC CCGCCCCCCG ATTCGTCGAC AGCACCGACG GAGTGCGCGT TGCGGTGTAC 
GAAGAGGGCA ACCCCGACGG GCCCACGGTG ATCCTCGTGC ACGGCTGGCC GGATTCCCAT
GTGGTGTGGG ACAGCGTCGC GGCCGAACTC GCCGACCGCT TCCACGTCGT GCGCTACGAC
AACCGCGGCG TCAGCCCCAC CTCGGCGCCG AAACGCGCCG CGGCGTACAC CACCGCGCGC
TACGCCGACG ACTTCGCCGC CGTCGCCGAC GCGGTGGCGC CGGGCCGGCG GGTGCACGTG
GTGGCGCACG ACTGGGGTTC GACGGGCATG TGGGAGTACC TGTCCCGGCC CGAGGCCGCC
GACCGGGTGG CCTCCTACAC CTCGCTGTCC GGGCCGAGCG TCGACCATGT GTACCGCTAC
GTGCTCGACG GGCTCAAACG GCCGTACCGG ATCCGTCGCC TGGCTCGCGC GCTGAACCAG
TTCGCCCGGC TGAGCTACAT GATCCTGCTG TCGGTTCCTC TGGTGGCCCC GGTGTTGGTG
CGCGCCTTCA TCGCCGAGGG TCTGCGGAAG TACCAGAGGG TCGCCGAAGG CATCCCGGCC
GATCGGCTGC TGCACTCCGA CACCTACCGG GCCGATGCCG CGCGAAGCGT GAAAGTCTAC
CGCGCCAACT ACTTTCGGTC ATTGCTGACC AAGCGCACCC CCCGCGTCGT GGACGTCCCC
GTACAGCTGA TCGTCAACAC CGGCGACGCG TTCATCCGGC CCTACGTCTA CGACGAGATC
GCGCCGTGGG TGCCGACTCT GTGGCGCCGT GAGCTGCGCG CGGGCCACTG GTCGCCGATG
TCGCATCCGC ATGTGATCGC AAGGGCGGTG GCCGAACTCG TCGAACACGT CGACGGCGCT
CCGGCCGCCC GGGAGCTGCG CCGGGCGCGG GTCGGCGGGC CGCGCGAATA CTTCTCGGAC
ACACTGGTTT CGGTGACCGG TGCGGGCAGC GGCATCGGCC GTGAGACCGC GCTGGCGTTC
GCACGCGAAG GCGCCGAACT GGTGGTCAGC GATATCGACG AGGCCAGTGC CAAGGAGACC
GCGGCCGCGA TCGAAGCCGC CGGCGGCGTC GCGCACGCCT ACCGGCTCGA CGTGGCCGAC
GCCGATGCGG TCGAGCGGTT CGCCGACGAG GTCTGCGCCG GCCACGGTAT CCCCGACATC
GTCGTCAACA ACGCCGGCGT GGGACAGGCC GGCCGCTTCC TCGACACACC GCGCGACCAG
TGGGATCACG TACTCGACGT CAACCTCGGC GGGGTGGTCA ACGGCTGCCG CGCGTTCGCG
CGCAGGCTCG TCGAGCGCGG CACCGGTGGG CACATCGTCA ACGTCGCCTC GATGGCCTCG
TATGCCCCGC TGCAGTCGCT GAACGCGTAC TGCACCAGCA AGGCCGCGGT GTACATGTTC
TCCGATTGTC TGCGCGCCGA ACTCGACGAG GCGGGGATCG GGCTGACCAC GATCTGCCCG
AGCACCGTCG ACACCAACAT CGTGCGCAAC ACCCGCATCC ACGCCCCGGC CGACCGCACG
GGCGACGTCG CGGGCCGGCG CGGCCAACTG CAGAAGATGT TCGCGATGCG CCGCTACGGA
CCGGACAAGG CGGCCAAGGC GATCGTCGCC GCGGTCAAGG CGAACAAGGC GATCCGGCCG
GTGATGCCGG AGGCCTACTT CGTCTACGGG GTGTCCCGGG TGTTGCCGCA GGCGCTGCGC
AGCACCGCCC GCGGCCGCGT GCTCTAG
 
Protein sequence
MSRPAPRFVD STDGVRVAVY EEGNPDGPTV ILVHGWPDSH VVWDSVAAEL ADRFHVVRYD 
NRGVSPTSAP KRAAAYTTAR YADDFAAVAD AVAPGRRVHV VAHDWGSTGM WEYLSRPEAA
DRVASYTSLS GPSVDHVYRY VLDGLKRPYR IRRLARALNQ FARLSYMILL SVPLVAPVLV
RAFIAEGLRK YQRVAEGIPA DRLLHSDTYR ADAARSVKVY RANYFRSLLT KRTPRVVDVP
VQLIVNTGDA FIRPYVYDEI APWVPTLWRR ELRAGHWSPM SHPHVIARAV AELVEHVDGA
PAARELRRAR VGGPREYFSD TLVSVTGAGS GIGRETALAF AREGAELVVS DIDEASAKET
AAAIEAAGGV AHAYRLDVAD ADAVERFADE VCAGHGIPDI VVNNAGVGQA GRFLDTPRDQ
WDHVLDVNLG GVVNGCRAFA RRLVERGTGG HIVNVASMAS YAPLQSLNAY CTSKAAVYMF
SDCLRAELDE AGIGLTTICP STVDTNIVRN TRIHAPADRT GDVAGRRGQL QKMFAMRRYG
PDKAAKAIVA AVKANKAIRP VMPEAYFVYG VSRVLPQALR STARGRVL