| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1295 |
|---|
| Symbol | |
|---|
| ID | 6288108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1390626 |
|---|
| End bp | 1392434 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642624865 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001898871 |
|---|
| Protein GI | 187928384 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities
[COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.101432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.699766 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGC TTCTTGAAGA GGCTCCGCTG GCGTTGTTCG AATCGCCCGC AGCGGTTTCG
CCCAAAGACT ATTCGGCGCG GATGGTGCAG TCCGGCAGCG TCTCGCTCAC AGTCGAGACC
TGGGGCGACC CCGCGCACCC AACCGTCGTG CTAGTGCACG GCTACCCCGA CAACAGCGAG
GTCTGGCACG AGGTGGCACC GCTGCTCGCG CGGGATTACT ACGTCATTGC CTACGACGTG
CGGGGTGCGG GCCGGTCGAG TTCGCCCAAG GGGATGCGCA ACTACACCTT CGCGCGATTG
ACCGACGACT TCATCGCCGT CATCGATGCG CTGAGCCCGG GCAAGCCCGT GCACCTGATC
GCGCACGATT GGGGTTCGAT CCAGTCATGG GAATTCGTGA CGGAGGCGCG CCTGCGCGGG
CGCATTGCGT CATACACGTC GTGCTCGGGG CCGTGCCTGG ACCACGTCGG GCACTGGATG
CGCGCGCGAC TGCTGCGTCC GACGCCGTCG TCGCTGGGCA AGATGCTGGG CCAGCTCGTG
CGCTCGTGGT ACGTGCTGCT ATTCCATTTG CCGATCGTGC CGGAACTGAG TTGGCGCCTG
TGGCTCGGGC GCGCGTGGCC GCGTGTGCTG CGTCGTGTGG AGAAGACCGC CATCGTGCCG
CGCGCCACGC AGACGGCCGA CGGCGTGCGC GGTGTGTCGC TGTATCGCGC CAACTTCATC
CGCAGCCTGT TCACGCCTCG CAAGCGTGTC GCACATGCGC CGGTGCAGGT GATCGTGCCG
ACCCTGGACA AGTACGTCAG CCCCGCGTTG TCCGAAGACC TCTCGCGCTG GGTACCGCAG
TATTGGCGCC GCGAAGTTGT CGCGCGGCAC TGGCTGCCGG TCACGCATGC TGCACGCTTG
GCGGAGATGG CACGCGAGCT GATCGAGCAC GCCGAGGGCA AGCCGGAATC CGAGGCGCTG
CAACGCGCGC GTCAGCATGG CGACCGCAAA CCGCTCTGCG GCAAGCTGGC CGTCATCACG
GGCGCTGGCA GCGGCATCGG TCGTTGCGCG GCGCTGGAAT TCGCGGAGCA AGGCGCAGCC
ATTGTCGCCG TCGACATTCG TGCTGAAGAT GCAGAGCGCA CGGCCAAGCT CATCCGCCTC
ACGGGTGGCA AGGCGTGGGC GCATACCGTG GACGTCGGCA ACGCCGAGCA GATGGAAGCG
CTGGTCGATT GGGTCGGCAA GGAACTGGGC GGCGCCGACA TCGTCGTCAA CAACGCAGGC
ATCGGCATGG CCGGCGGCAT TGTCGACACG TCCGAGCGCG ATTGGCAGCG CATCCTGCAC
GTGAATGTGT GGGGCGTGAT CCACGGCGCC CGACTGTTCG CCAAGCAGAT GGTGGCGCGC
GGGCAGGGCG GTCACATCCT GAACACGGCA TCGGCGGCGG CCTTTGCGCC ATCGCGCGAT
CTTGCCGCCT ATGCGACGAC GAAGGCCGCA GTGCTGATGC TGTCCGAATG CATGCGTGGC
GAGCTGGCCG GGCAGGGCAT TGGCGTGTCG GCCATCTGCC CCGGTTTTGC AGAGACCGGA
ATCATGGCCT CCACGGTCTA CACCGGCACG ACCGAGGCAC AGCAAGCCCA ATTGCGCGCC
CGCGCCACCA AGCTCTACCA ACTGCGTGGC CTCAAGCCAG AGACCGTCGC AAAAGCCATG
TTCAGCGCGG TTCAACACAA CAAGCCCGTG GTCACGATCG GCATCGAGGC GCATTCGTCC
CGCTTCATCT CGCGCTATGC GCAATGGCTG AGCCGGCTGA TCGCGCGCGT GAGCATGGCC
GGGCATTGA
|
|---|
| Protein sequence | MKTLLEEAPL ALFESPAAVS PKDYSARMVQ SGSVSLTVET WGDPAHPTVV LVHGYPDNSE
VWHEVAPLLA RDYYVIAYDV RGAGRSSSPK GMRNYTFARL TDDFIAVIDA LSPGKPVHLI
AHDWGSIQSW EFVTEARLRG RIASYTSCSG PCLDHVGHWM RARLLRPTPS SLGKMLGQLV
RSWYVLLFHL PIVPELSWRL WLGRAWPRVL RRVEKTAIVP RATQTADGVR GVSLYRANFI
RSLFTPRKRV AHAPVQVIVP TLDKYVSPAL SEDLSRWVPQ YWRREVVARH WLPVTHAARL
AEMARELIEH AEGKPESEAL QRARQHGDRK PLCGKLAVIT GAGSGIGRCA ALEFAEQGAA
IVAVDIRAED AERTAKLIRL TGGKAWAHTV DVGNAEQMEA LVDWVGKELG GADIVVNNAG
IGMAGGIVDT SERDWQRILH VNVWGVIHGA RLFAKQMVAR GQGGHILNTA SAAAFAPSRD
LAAYATTKAA VLMLSECMRG ELAGQGIGVS AICPGFAETG IMASTVYTGT TEAQQAQLRA
RATKLYQLRG LKPETVAKAM FSAVQHNKPV VTIGIEAHSS RFISRYAQWL SRLIARVSMA
GH
|
|---|
| |