| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1032 |
|---|
| Symbol | |
|---|
| ID | 3969642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1132207 |
|---|
| End bp | 1132974 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924144 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_530916 |
|---|
| Protein GI | 90422546 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | [TIGR03206] 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGTC TGCAAAACAA GACTGTCGTG ATCACGGGCG GCGGCGGCGG CATAGGCGGG
GCCACCTGTC GAAAATTCGC GCAAGAGGGC GCCGAGGTCG CGGTGCTGGA TCTCAATCTC
GAAGCGGCGG AGAAAGTAGC CGCCGAGATC CGCGCGGCCG GTGGCACCGC CGAGGCGTTC
AAGTGCGACA TCGCCGATCG GGCCAGCGTC AACGCCGCGG TGGCGGCGAC GCAAACAAAG
CTCGGCCCCA TTGACGTGCT GGTCAACAAC GCTGGCTGGG ACATCTTTAA GCCTTTCGCC
AAATCCGACC CCGGCGAGTG GGAGAAGCTG ATCGCCATCA ACCTGACCGG TGCACTGCAT
ATGCATCACG CGGTCCTGCC GGGAATGGTC GAGCGCCGCT ACGGGCGAAT CGTCAATATC
GCCTCCGATG CCGCGCGCGT CGGTTCCTCT GGCGAGGCAG TGTACGCGGC TTGCAAGGGC
GGCCTGGTCG CCTTCTCAAA AACGCTGGCG CGCGAACATG CCCGCCACGG TATTACCGTG
AACGTCGTTT GCCCCGGTCC AACCGATACC GCGCTGCTGG CCGGCGTCAC CTCCGGCGCG
CCCAATCCAG AAAAACTGGT GGAGGCCTTC ACGAAGGCGA TCCCGCTCGG GCGGCTCGGC
CAGCCGGACG ATCTCGCCGG CGCGATCGTG TTCTTCGGCA GCGACGAGGC ATCGTTCGTC
ACCGGTCAGG TGCTGAGTGT CTCCGGCGGC CTGACCATGA ACGGCTAA
|
|---|
| Protein sequence | MARLQNKTVV ITGGGGGIGG ATCRKFAQEG AEVAVLDLNL EAAEKVAAEI RAAGGTAEAF
KCDIADRASV NAAVAATQTK LGPIDVLVNN AGWDIFKPFA KSDPGEWEKL IAINLTGALH
MHHAVLPGMV ERRYGRIVNI ASDAARVGSS GEAVYAACKG GLVAFSKTLA REHARHGITV
NVVCPGPTDT ALLAGVTSGA PNPEKLVEAF TKAIPLGRLG QPDDLAGAIV FFGSDEASFV
TGQVLSVSGG LTMNG
|
|---|
| |