Gene RPD_1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1541 
Symbol 
ID4022021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1717662 
End bp1718429 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content67% 
IMG OID637961736 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_568679 
Protein GI91976020 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID[TIGR03206] 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.111492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGTC TGCAGAACAA GACTGTCGTG ATCACGGGCG GCGGCGGCGG CATCGGCGGC 
GCGACCTGCC GCAAATTCGC GCAAGAGGGC GCCAAGGTTG CCGTGCTGGA CCTCAATCTC
GAAGCCGCCG AGAAAGTCGC CGCCGAGATC CGCGCGTCGG GTGGCGTCGC CGAAGCGTTC
AAGTGCGACA TCGCCGACCG GGCCAGCGTC GATGCCGCCG TGGCGGCGAC ACAAACCAAG
CTCGGTCCGA TCGACGTGCT GGTGAACAAT GCCGGCTGGG ACATCTTCAA GCCGTTCACC
AAGTCTGATC CCGGCGAATG GGAGAAGCTG ATCGCGATCA ATTTGACGGG CGCGCTGCAT
ATGCATCACG CCATTCTGCC GGGCATGGTC GAGCGTCGCT ACGGACGCAT TGTCAATGTC
GCCTCCGACG CCGCCCGTGT CGGCTCGTCC GGCGAGGCGG TGTATGCGGC GTGCAAGGGC
GGTCTCGTCG CGTTCTCGAA GACGATCGCG CGCGAGCACT CCCGTCACGG CATCACCGTC
AACGTCGTCT GTCCCGGCCC GACCGATACG GCGCTGCTGG CCGGCGTCAC CAGCGGCGCG
CCCAATCCGG AAAAGCTGGT CGAAGCCTTC ACCAAGGCGA TCCCGATCGG GCGCCTCGGC
CAGCCGGACG ATCTCGCCGG CGCGATCGTG TTCTTCGGCA GCGACGAGGC GTCGTTCGTC
ACCGGCCAGG TGCTGAGCGT CTCCGGCGGG CTGACGATGA ACGGCTGA
 
Protein sequence
MARLQNKTVV ITGGGGGIGG ATCRKFAQEG AKVAVLDLNL EAAEKVAAEI RASGGVAEAF 
KCDIADRASV DAAVAATQTK LGPIDVLVNN AGWDIFKPFT KSDPGEWEKL IAINLTGALH
MHHAILPGMV ERRYGRIVNV ASDAARVGSS GEAVYAACKG GLVAFSKTIA REHSRHGITV
NVVCPGPTDT ALLAGVTSGA PNPEKLVEAF TKAIPIGRLG QPDDLAGAIV FFGSDEASFV
TGQVLSVSGG LTMNG