Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1541 |
Symbol | |
ID | 4022021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1717662 |
End bp | 1718429 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637961736 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_568679 |
Protein GI | 91976020 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | [TIGR03206] 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.111492 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCGTC TGCAGAACAA GACTGTCGTG ATCACGGGCG GCGGCGGCGG CATCGGCGGC GCGACCTGCC GCAAATTCGC GCAAGAGGGC GCCAAGGTTG CCGTGCTGGA CCTCAATCTC GAAGCCGCCG AGAAAGTCGC CGCCGAGATC CGCGCGTCGG GTGGCGTCGC CGAAGCGTTC AAGTGCGACA TCGCCGACCG GGCCAGCGTC GATGCCGCCG TGGCGGCGAC ACAAACCAAG CTCGGTCCGA TCGACGTGCT GGTGAACAAT GCCGGCTGGG ACATCTTCAA GCCGTTCACC AAGTCTGATC CCGGCGAATG GGAGAAGCTG ATCGCGATCA ATTTGACGGG CGCGCTGCAT ATGCATCACG CCATTCTGCC GGGCATGGTC GAGCGTCGCT ACGGACGCAT TGTCAATGTC GCCTCCGACG CCGCCCGTGT CGGCTCGTCC GGCGAGGCGG TGTATGCGGC GTGCAAGGGC GGTCTCGTCG CGTTCTCGAA GACGATCGCG CGCGAGCACT CCCGTCACGG CATCACCGTC AACGTCGTCT GTCCCGGCCC GACCGATACG GCGCTGCTGG CCGGCGTCAC CAGCGGCGCG CCCAATCCGG AAAAGCTGGT CGAAGCCTTC ACCAAGGCGA TCCCGATCGG GCGCCTCGGC CAGCCGGACG ATCTCGCCGG CGCGATCGTG TTCTTCGGCA GCGACGAGGC GTCGTTCGTC ACCGGCCAGG TGCTGAGCGT CTCCGGCGGG CTGACGATGA ACGGCTGA
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Protein sequence | MARLQNKTVV ITGGGGGIGG ATCRKFAQEG AKVAVLDLNL EAAEKVAAEI RASGGVAEAF KCDIADRASV DAAVAATQTK LGPIDVLVNN AGWDIFKPFT KSDPGEWEKL IAINLTGALH MHHAILPGMV ERRYGRIVNV ASDAARVGSS GEAVYAACKG GLVAFSKTIA REHSRHGITV NVVCPGPTDT ALLAGVTSGA PNPEKLVEAF TKAIPIGRLG QPDDLAGAIV FFGSDEASFV TGQVLSVSGG LTMNG
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