43 homologs were found in PanDaTox collection
for query gene Tbd_0228 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007404  Tbd_0228  MarR family transcriptional regulator  100 
 
 
192 aa  387  1e-107  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.209959 
 
 
-
 
NC_010506  Swoo_1503  MarR family transcriptional regulator  39.78 
 
 
189 aa  138  4.999999999999999e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  0.481743  normal 
 
 
-
 
NC_003910  CPS_4905  putative transcriptional regulator  38.33 
 
 
184 aa  138  4.999999999999999e-32  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2045  MarR family transcriptional regulator  44.62 
 
 
190 aa  136  2e-31  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1088  MarR family transcriptional regulator  41.53 
 
 
199 aa  135  3.0000000000000003e-31  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2690  MarR family transcriptional regulator  39.57 
 
 
188 aa  127  1.0000000000000001e-28  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_52070  transcriptional regulator  44.81 
 
 
186 aa  126  2.0000000000000002e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0119857 
 
 
-
 
NC_009425  Ent638_4209  MarR family transcriptional regulator  42.33 
 
 
189 aa  124  1e-27  Enterobacter sp. 638  Bacteria  normal  0.0466209  normal 
 
 
-
 
NC_009656  PSPA7_4567  transcriptional regulator  42.08 
 
 
186 aa  117  7.999999999999999e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  0.424038  n/a   
 
 
-
 
NC_009832  Spro_3772  MarR family transcriptional regulator  39.01 
 
 
181 aa  112  2.0000000000000002e-24  Serratia proteamaculans 568  Bacteria  normal  0.064447  normal  0.0771773 
 
 
-
 
NC_007964  Nham_0658  MarR family transcriptional regulator  38.95 
 
 
191 aa  113  2.0000000000000002e-24  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1927  transcriptional regulator, MarR family  38.55 
 
 
187 aa  110  1.0000000000000001e-23  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.381478  n/a   
 
 
-
 
NC_007406  Nwi_0565  MarR family transcriptional regulator  36.7 
 
 
189 aa  106  2e-22  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1921  MarR family transcriptional regulator  25.95 
 
 
190 aa  61.2  0.000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4139  MarR family transcriptional regulator  24.44 
 
 
201 aa  60.1  0.00000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2109  MarR family transcriptional regulator  30.99 
 
 
145 aa  60.5  0.00000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5106  transcriptional regulator, MarR family  24.59 
 
 
206 aa  58.9  0.00000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.248862  normal  0.417373 
 
 
-
 
NC_009523  RoseRS_1206  MarR family transcriptional regulator  28.49 
 
 
206 aa  58.9  0.00000005  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3267  transcriptional regulator, MarR family  25.29 
 
 
207 aa  52.8  0.000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1762  transcriptional regulator, MarR family  26.37 
 
 
196 aa  52.4  0.000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_2862  transcriptional regulator, MarR family  25 
 
 
208 aa  51.2  0.000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.182461 
 
 
-
 
NC_013093  Amir_4421  transcriptional regulator, MarR family  27.75 
 
 
197 aa  50.8  0.00001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.636596  n/a   
 
 
-
 
NC_013132  Cpin_2911  transcriptional regulator, MarR family  24.38 
 
 
218 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.233066  normal 
 
 
-
 
NC_013947  Snas_4941  transcriptional regulator, MarR family  29.25 
 
 
173 aa  47  0.0002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.497711  normal  0.847293 
 
 
-
 
NC_007908  Rfer_0178  MarR family transcriptional regulator  38.16 
 
 
158 aa  45.4  0.0004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0210  MarR family transcriptional regulator  26.97 
 
 
224 aa  45.4  0.0005  Frankia sp. CcI3  Bacteria  normal  normal  0.133838 
 
 
-
 
NC_013946  Mrub_1858  MarR family transcriptional regulator  26.11 
 
 
196 aa  45.1  0.0007  Meiothermus ruber DSM 1279  Bacteria  normal  0.642234  normal 
 
 
-
 
NC_013739  Cwoe_0390  transcriptional regulator, MarR family  34.02 
 
 
165 aa  44.3  0.001  Conexibacter woesei DSM 14684  Bacteria  normal  0.471092  normal  0.0364487 
 
 
-
 
NC_003295  RSc0149  transcription regulator protein  30.09 
 
 
157 aa  44.7  0.001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.160744  normal  0.599627 
 
 
-
 
NC_009921  Franean1_1589  MarR family transcriptional regulator  41.79 
 
 
169 aa  44.3  0.001  Frankia sp. EAN1pec  Bacteria  normal  0.0850023  normal  0.119457 
 
 
-
 
NC_010681  Bphyt_2739  transcriptional regulator, MarR family  36.76 
 
 
157 aa  43.1  0.002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.340689  normal 
 
 
-
 
NC_004578  PSPTO_3749  multiple antibiotic resistance protein MarR, putative  33.01 
 
 
162 aa  43.1  0.002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.17828  n/a   
 
 
-
 
NC_013172  Bfae_13520  transcriptional regulator  30.77 
 
 
163 aa  42.7  0.003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.219319  n/a   
 
 
-
 
NC_007964  Nham_1511  MarR family transcriptional regulator  28.36 
 
 
159 aa  42.7  0.003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5709  MarR family transcriptional regulator  31.68 
 
 
176 aa  42.4  0.004  Sinorhizobium medicae WSM419  Bacteria  normal  0.054314  normal 
 
 
-
 
NC_010002  Daci_3655  MarR family transcriptional regulator  33.08 
 
 
163 aa  42.4  0.005  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00553213  normal  0.217217 
 
 
-
 
NC_009664  Krad_3511  transcriptional regulator, MarR family  36.23 
 
 
142 aa  42.4  0.005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A2637  MarR family transcriptional regulator  35.06 
 
 
152 aa  42  0.005  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.00137788  normal  0.21976 
 
 
-
 
NC_011071  Smal_3618  transcriptional regulator, MarR family  36.25 
 
 
167 aa  42  0.006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0269  MarR family transcriptional regulator  35.44 
 
 
138 aa  41.6  0.008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2372  MarR family transcriptional regulator  28.46 
 
 
157 aa  41.2  0.01  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009376  Pars_0550  regulatory protein, MarR  25.36 
 
 
175 aa  41.2  0.01  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  0.0117945  normal 
 
 
-
 
NC_013595  Sros_2280  hypothetical protein  29.46 
 
 
162 aa  41.2  0.01  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0154888  normal  0.295989 
 
 
-
 
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