More than 300 homologs were found in PanDaTox collection
for query gene Sfri_1214 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  100 
 
 
527 aa  1083    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03783  Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)  54.32 
 
 
527 aa  534  1e-150  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3735  PAS  43.51 
 
 
521 aa  412  1e-114  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_010322  PputGB1_4027  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  43.79 
 
 
521 aa  409  1e-113  Pseudomonas putida GB-1  Bacteria  normal  0.664053  normal  0.0821551 
 
 
-
 
NC_002947  PP_4521  aerotaxis receptor, putative  42.94 
 
 
521 aa  409  1e-113  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  42.02 
 
 
521 aa  410  1e-113  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_009512  Pput_1390  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
534 aa  410  1e-113  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  41.24 
 
 
521 aa  406  1.0000000000000001e-112  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  41.24 
 
 
521 aa  407  1.0000000000000001e-112  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  42 
 
 
521 aa  406  1.0000000000000001e-112  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  42.88 
 
 
521 aa  402  1e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.43 
 
 
521 aa  403  1e-111  Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.05 
 
 
521 aa  404  1e-111  Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  43.57 
 
 
521 aa  403  1e-111  Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_004578  PSPTO_2014  aerotaxis receptor  41.37 
 
 
521 aa  400  9.999999999999999e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3406  PAS  40.8 
 
 
521 aa  399  9.999999999999999e-111  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.387271  normal  0.671486 
 
 
-
 
NC_010501  PputW619_3813  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  43.15 
 
 
521 aa  399  9.999999999999999e-111  Pseudomonas putida W619  Bacteria  normal  0.629648  normal  0.0156802 
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  40.87 
 
 
521 aa  394  1e-108  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  40.3 
 
 
521 aa  390  1e-107  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0262  methyl-accepting chemotaxis sensory transducer  42.22 
 
 
524 aa  389  1e-107  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3109  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
522 aa  377  1e-103  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3595  methyl-accepting chemotaxis sensory transducer  41.76 
 
 
515 aa  363  6e-99  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1888  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.06 
 
 
521 aa  359  5e-98  Pseudomonas putida GB-1  Bacteria  normal  0.378373  normal 
 
 
-
 
NC_009512  Pput_3481  methyl-accepting chemotaxis sensory transducer  41.51 
 
 
521 aa  357  1.9999999999999998e-97  Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_002947  PP_2257  aerotaxis receptor Aer-1  41.06 
 
 
521 aa  356  3.9999999999999996e-97  Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.6 
 
 
523 aa  342  8e-93  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.16 
 
 
521 aa  317  3e-85  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_008740  Maqu_0389  methyl-accepting chemotaxis sensory transducer  43.63 
 
 
419 aa  316  6e-85  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  36.19 
 
 
529 aa  304  3.0000000000000004e-81  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3460  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
520 aa  296  6e-79  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1860  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.23 
 
 
524 aa  293  4e-78  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  32.56 
 
 
518 aa  293  7e-78  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.21 
 
 
524 aa  290  6e-77  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  34.53 
 
 
524 aa  290  6e-77  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  34.53 
 
 
524 aa  289  7e-77  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  35.63 
 
 
524 aa  289  7e-77  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.53 
 
 
524 aa  289  7e-77  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.75 
 
 
526 aa  288  2e-76  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.59 
 
 
524 aa  286  5e-76  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.59 
 
 
524 aa  286  9e-76  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  34.81 
 
 
524 aa  283  4.0000000000000003e-75  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4451  methyl-accepting chemotaxis sensory transducer  35.9 
 
 
531 aa  280  3e-74  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1987  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  34.58 
 
 
518 aa  277  3e-73  Shewanella sediminis HAW-EB3  Bacteria  normal  0.185607  normal  0.0170041 
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  32.64 
 
 
511 aa  275  1.0000000000000001e-72  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0584  methyl-accepting chemotaxis protein  34.33 
 
 
524 aa  272  1e-71  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  33.68 
 
 
516 aa  272  1e-71  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_009831  Ssed_2690  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  34.14 
 
 
524 aa  270  4e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  0.487789  normal 
 
 
-
 
NC_009052  Sbal_1238  methyl-accepting chemotaxis sensory transducer  36.72 
 
 
522 aa  267  5e-70  Shewanella baltica OS155  Bacteria  normal  0.0615962  n/a   
 
 
-
 
NC_008752  Aave_2113  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.21 
 
 
550 aa  267  5e-70  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3073  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.72 
 
 
522 aa  266  8.999999999999999e-70  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000166485 
 
 
-
 
NC_009997  Sbal195_1317  methyl-accepting chemotaxis sensory transducer  36.72 
 
 
522 aa  265  1e-69  Shewanella baltica OS195  Bacteria  normal  normal  0.0176898 
 
 
-
 
NC_009665  Shew185_1282  methyl-accepting chemotaxis sensory transducer  36.51 
 
 
522 aa  265  2e-69  Shewanella baltica OS185  Bacteria  normal  0.13527  n/a   
 
 
-
 
NC_010623  Bphy_4269  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.63 
 
 
556 aa  264  3e-69  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  35.45 
 
 
520 aa  261  2e-68  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1220  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.85 
 
 
522 aa  259  6e-68  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.32 
 
 
598 aa  259  7e-68  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1150  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.85 
 
 
522 aa  258  1e-67  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1149  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.85 
 
 
522 aa  258  2e-67  Shewanella sp. MR-4  Bacteria  normal  0.737349  normal 
 
 
-
 
NC_008321  Shewmr4_2808  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.47 
 
 
522 aa  258  2e-67  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3519  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.99 
 
 
514 aa  257  4e-67  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.07 
 
 
522 aa  256  7e-67  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2891  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.27 
 
 
522 aa  256  9e-67  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1621  methyl-accepting chemotaxis protein  34.61 
 
 
513 aa  255  1.0000000000000001e-66  Colwellia psychrerythraea 34H  Bacteria  normal  0.113175  n/a   
 
 
-
 
NC_007952  Bxe_B2984  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  33.57 
 
 
565 aa  255  1.0000000000000001e-66  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0995  putative methyl-accepting chemotaxis sensory transducer  33.2 
 
 
517 aa  254  2.0000000000000002e-66  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3023  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.77 
 
 
514 aa  254  2.0000000000000002e-66  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2726  methyl-accepting chemotaxis sensory transducer  35.47 
 
 
538 aa  255  2.0000000000000002e-66  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3097  methyl-accepting chemotaxis sensory transducer  33.78 
 
 
522 aa  254  3e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0618  methyl-accepting chemotaxis protein  32.39 
 
 
583 aa  253  4.0000000000000004e-66  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1280  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.78 
 
 
522 aa  253  5.000000000000001e-66  Shewanella baltica OS223  Bacteria  normal  normal  0.160306 
 
 
-
 
NC_009052  Sbal_3087  methyl-accepting chemotaxis sensory transducer  33.01 
 
 
522 aa  252  1e-65  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3240  methyl-accepting chemotaxis sensory transducer  33.4 
 
 
533 aa  252  1e-65  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3404  methyl-accepting chemotaxis protein  35.26 
 
 
522 aa  251  2e-65  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010676  Bphyt_6942  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.39 
 
 
566 aa  251  3e-65  Burkholderia phytofirmans PsJN  Bacteria  normal  0.819674  normal 
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.56 
 
 
551 aa  249  6e-65  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_007298  Daro_1363  PAS  34.49 
 
 
544 aa  249  1e-64  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000284571 
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.62 
 
 
523 aa  249  1e-64  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_011992  Dtpsy_2648  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.46 
 
 
520 aa  249  1e-64  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.02 
 
 
511 aa  249  1e-64  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2405  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  31.91 
 
 
514 aa  248  2e-64  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000957151  normal  0.313744 
 
 
-
 
NC_009438  Sputcn32_1196  methyl-accepting chemotaxis sensory transducer  34 
 
 
522 aa  248  2e-64  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3219  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.33 
 
 
516 aa  248  2e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.1353  n/a   
 
 
-
 
NC_006348  BMA0264  methyl-accepting chemotaxis protein  31.38 
 
 
580 aa  246  6e-64  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2473  methyl-accepting chemotaxis protein  31.38 
 
 
580 aa  246  6e-64  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2390  methyl-accepting chemotaxis protein  31.38 
 
 
580 aa  246  6e-64  Burkholderia mallei NCTC 10229  Bacteria  normal  0.790589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2685  methyl-accepting chemotaxis protein  31.38 
 
 
580 aa  246  6e-64  Burkholderia mallei SAVP1  Bacteria  normal  0.394636  n/a   
 
 
-
 
NC_008789  Hhal_1125  methyl-accepting chemotaxis sensory transducer  32.94 
 
 
532 aa  246  6e-64  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0602  methyl-accepting chemotaxis protein  33.66 
 
 
536 aa  245  1.9999999999999999e-63  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3295  methyl-accepting chemotaxis sensory transducer  33.59 
 
 
519 aa  244  3e-63  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0760  aerotaxis sensor receptor  31.2 
 
 
583 aa  244  3e-63  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  34.36 
 
 
557 aa  244  3e-63  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_007434  BURPS1710b_0927  methyl-accepting chemotaxis protein  31.2 
 
 
623 aa  244  3e-63  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0749  aerotaxis sensor receptor  31.2 
 
 
669 aa  243  3.9999999999999997e-63  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3270  methyl-accepting chemotaxis sensory transducer  31.11 
 
 
532 aa  244  3.9999999999999997e-63  Marinobacter aquaeolei VT8  Bacteria  normal  0.415489  n/a   
 
 
-
 
NC_008825  Mpe_A2920  aerotaxis sensor receptor  33.71 
 
 
549 aa  243  5e-63  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2372  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.09 
 
 
579 aa  243  9e-63  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5364  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.92 
 
 
514 aa  242  1e-62  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0337  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.04 
 
 
517 aa  242  1e-62  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1294  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.18 
 
 
575 aa  241  2e-62  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00873235 
 
 
-
 
NC_009092  Shew_2577  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.95 
 
 
524 aa  241  2.9999999999999997e-62  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
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