Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1214 |
Symbol | |
ID | 4278028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1424345 |
End bp | 1425928 |
Gene Length | 1584 bp |
Protein Length | 527 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133989 |
Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
Protein accession | YP_749905 |
Protein GI | 114562392 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCAATA ATCAACCCGT TACCCTCAAT CAGTACAACT TCGATGATGC TCTTCGTTTA ATTTCAGGAA CCGATCTGCG CGGCCATATT ACCTATTGTA ATGATGCTTT TGTTGAGGTC AGCGGCTTTG AAAAAAGTGA GTTAATCGGT AAACCACATA ACCTTGTGCG TCATCCAGAC ATGCCAAGTG AAGTATTTAA AGATATGTGG GCATGTATCT CAAGCGGTAA AGTGTGGATG GGACTGGTTA AGAATCGTCG TAAAAATGGT GATTATTATT GGGTTAGCGC ATTTGTTACT CCAGTATTCG AAAATAATAA AATAGCAGGT TACGAGTCTG TTAGGGTTAC TGCATTACCA AGTGAAATTG CCCGTGCTGA AGCGGCTTAT GCCAGAATAA AAGCTAATAA GTCACCAAGA CCACTTCATG CAAAAATAAA ACATCAAGTA ATTAAATTAT TACCCGCATG GTTACCAATG TTTATTTTGT CCATTGTATT AACTGAGTTC TGGGGGGGTG TGCCTGGTGC AATGGGTTTA TTCACCCTTG TATTATCAAC GGCTTGGTTG GGCTATAAAC AGCAACAAGA TTGGTATGAA GTCGTCAAAC TTAATCCTAA TTCGTTTACA GATCTCATTG TGGCAGAAAC CTATTTTGCT GATTTTGGCG CTAAAGCGCA GGCAAAATTG GCTCTGGGTT GCGAAGTTGC TCGTTGTCGT ACAGCGATGA CGCGTATTGA AGATGCTGCA AAATCATTAG ATGGCATTGT CGAGCACACT CAACTTGAGG CTGAATCAAC GGCTAAAGCG GTAAGTTTAC AAAGTGTATC AACACAACAG ATTGCTTCGG CAATTACCCA GATGTCTACA GCTATTCAAG AAGTGTCCGC TAATGTCGAG CGTAATGCTT ACAGCGCAAA AGAAGCATTA GACAATGTTA CCGACGGAGC TCAACTGGCT AATCAAGCTA AACAGTCTAT TGATGAATTA AATCTGTCTG TCGCGGATAT CGCTAAAACA GTACGCGAGT TATCTGACTC TACAAATGAG ATCGGCCAAG CGGCCAGTCT TATTTCGAGT ATTGCCGACC AAACCAATTT GTTGGCCTTA AATGCCGCGA TTGAAGCCGC AAGGGCGGGG GAACAAGGTC GTGGATTCAG CGTTGTTGCA GATGAAGTAC GTTCCCTAGC ACTGAAAACT CGAGAATCGA CCGATAGAAT TCACAGCATA GTGAGTGTAC TAACGAAGCG AGCCAGTAAT GCCGTTCAAG TGTCGGTTAG GGGGGAGCAA GCAGCCAGTA AAGGTGTTGA GATTGTTGAT AAAACGCGTA ACGCATTAGC GTCGATTAAC CAATCCGTTG AACAAATCAC CCAACTTACC TTAGATATGT CTGCGGCGGT AGAGCAGCAG AGTGCAGTCG CTGAGCATAT TAATCAGCAA ATTATTGATA TTGCAGATTC TGCAGAAATT ACTAAAGCTT CATCAGAAAA ATCGTTACAT AACAGCAGTG AATTGGGCCA GTCAGTGTTG ATGGTTCGAT CTATTATTAG GCGTTTTGCT GTAGGGACAT TAGGTAAGAA ATAG
|
Protein sequence | MRNNQPVTLN QYNFDDALRL ISGTDLRGHI TYCNDAFVEV SGFEKSELIG KPHNLVRHPD MPSEVFKDMW ACISSGKVWM GLVKNRRKNG DYYWVSAFVT PVFENNKIAG YESVRVTALP SEIARAEAAY ARIKANKSPR PLHAKIKHQV IKLLPAWLPM FILSIVLTEF WGGVPGAMGL FTLVLSTAWL GYKQQQDWYE VVKLNPNSFT DLIVAETYFA DFGAKAQAKL ALGCEVARCR TAMTRIEDAA KSLDGIVEHT QLEAESTAKA VSLQSVSTQQ IASAITQMST AIQEVSANVE RNAYSAKEAL DNVTDGAQLA NQAKQSIDEL NLSVADIAKT VRELSDSTNE IGQAASLISS IADQTNLLAL NAAIEAARAG EQGRGFSVVA DEVRSLALKT RESTDRIHSI VSVLTKRASN AVQVSVRGEQ AASKGVEIVD KTRNALASIN QSVEQITQLT LDMSAAVEQQ SAVAEHINQQ IIDIADSAEI TKASSEKSLH NSSELGQSVL MVRSIIRRFA VGTLGKK
|
| |