More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3778 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007908  Rfer_3778  response regulator receiver domain-containing protein  100 
 
 		 124 aa  245  1e-64  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_0237  response regulator receiver protein  71.77 
 
 		 124 aa  184  3e-46  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000555979 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  70.83 
 
 		 122 aa  176  1e-43  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_007948  Bpro_4150  response regulator receiver protein  65.83 
 
 		 125 aa  174  3e-43  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.583085 
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  68.33 
 
 		 123 aa  170  5e-42  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008688  Pden_5113  response regulator receiver protein  61.67 
 
 		 121 aa  164  2.9999999999999998e-40  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_0669  response regulator receiver protein  65.83 
 
 		 123 aa  162  1.0000000000000001e-39  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_2427  response regulator receiver protein  61.54 
 
 		 159 aa  161  3e-39  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.468058 
 
 
-
 
NC_008789  Hhal_1901  response regulator receiver protein  57.5 
 
 		 125 aa  147  6e-35  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_2029  response regulator receiver protein  59.17 
 
 		 124 aa  145  2.0000000000000003e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.371136 
 
 
-
 
NC_013730  Slin_2044  response regulator receiver protein  57.76 
 
 		 123 aa  144  4.0000000000000006e-34  Spirosoma linguale DSM 74  Bacteria  normal  0.0300859  normal  0.405857 
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  53.28 
 
 		 132 aa  138  3e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  54.47 
 
 		 234 aa  130  3.9999999999999996e-30  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_2054  response regulator receiver protein  50.79 
 
 		 140 aa  131  3.9999999999999996e-30  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.0880044 
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  54.47 
 
 		 234 aa  130  3.9999999999999996e-30  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  54.47 
 
 		 236 aa  127  4.0000000000000003e-29  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_007413  Ava_4431  response regulator receiver domain-containing protein  51.22 
 
 		 125 aa  127  6e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  50 
 
 		 225 aa  122  1e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  46.34 
 
 		 231 aa  122  2e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  54.55 
 
 		 232 aa  122  2e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  54.24 
 
 		 229 aa  120  5e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  0.834843 
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  50 
 
 		 239 aa  119  9e-27  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  53.72 
 
 		 230 aa  119  9.999999999999999e-27  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  50.41 
 
 		 235 aa  119  9.999999999999999e-27  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  48.36 
 
 		 226 aa  119  1.9999999999999998e-26  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  47.9 
 
 		 235 aa  117  3.9999999999999996e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  50.41 
 
 		 236 aa  117  6e-26  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  50.41 
 
 		 234 aa  116  9e-26  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  49.59 
 
 		 233 aa  116  9.999999999999999e-26  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  49.59 
 
 		 233 aa  116  9.999999999999999e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  49.59 
 
 		 233 aa  116  9.999999999999999e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  50.41 
 
 		 237 aa  116  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007493  RSP_0573  response regulator receiver protein  49.59 
 
 		 129 aa  115  9.999999999999999e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.087024  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  47.54 
 
 		 231 aa  115  9.999999999999999e-26  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  47.06 
 
 		 226 aa  116  9.999999999999999e-26  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_2226  response regulator receiver protein  49.59 
 
 		 129 aa  115  9.999999999999999e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.561592  normal  0.814785 
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  47.06 
 
 		 230 aa  115  1.9999999999999998e-25  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  46.34 
 
 		 231 aa  115  1.9999999999999998e-25  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  48.74 
 
 		 326 aa  115  3e-25  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1406  response regulator receiver protein  45.38 
 
 		 121 aa  115  3e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0894387  normal  1 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  49.58 
 
 		 234 aa  115  3e-25  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  47.54 
 
 		 231 aa  114  3e-25  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_009428  Rsph17025_0504  response regulator receiver protein  49.59 
 
 		 129 aa  114  3.9999999999999997e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0548558  normal  0.11151 
 
 
-
 
NC_013093  Amir_6208  two component transcriptional regulator, winged helix family  47.93 
 
 		 226 aa  114  6e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  44.63 
 
 		 229 aa  113  6.9999999999999995e-25  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal  1 
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  43.9 
 
 		 243 aa  113  7.999999999999999e-25  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal  1 
 
 
-
 
NC_009457  VC0395_A0150  sensory box sensor histidine kinase/response regulator  46.22 
 
 		 1177 aa  112  1.0000000000000001e-24  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_1276  two component transcriptional regulator, winged helix family  48.33 
 
 		 242 aa  112  1.0000000000000001e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.114994 
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  47.93 
 
 		 227 aa  113  1.0000000000000001e-24  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_013510  Tcur_1461  two component transcriptional regulator, winged helix family  49.58 
 
 		 225 aa  112  1.0000000000000001e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  0.616357  n/a   
 
 
-
 
NC_009380  Strop_1873  response regulator receiver  47.9 
 
 		 326 aa  112  2.0000000000000002e-24  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.402703 
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  48.76 
 
 		 235 aa  112  2.0000000000000002e-24  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_0791  response regulator receiver domain-containing protein  46.61 
 
 		 125 aa  112  2.0000000000000002e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  1  hitchhiker  0.00778943 
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  44.72 
 
 		 231 aa  112  2.0000000000000002e-24  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_012793  GWCH70_0170  two component transcriptional regulator, winged helix family  43.33 
 
 		 232 aa  112  2.0000000000000002e-24  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  44.72 
 
 		 233 aa  112  2.0000000000000002e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  48.76 
 
 		 310 aa  112  2.0000000000000002e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  43.8 
 
 		 225 aa  111  3e-24  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_013525  Tter_1071  two component transcriptional regulator, winged helix family  51.92 
 
 		 238 aa  111  3e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  45 
 
 		 227 aa  111  3e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.0239565 
 
 
-
 
NC_009972  Haur_4663  two component transcriptional regulator  50 
 
 		 232 aa  111  3e-24  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  45.3 
 
 		 231 aa  111  3e-24  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  50 
 
 		 238 aa  111  4.0000000000000004e-24  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4670  two component transcriptional regulator, winged helix family  46.34 
 
 		 234 aa  111  4.0000000000000004e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  43.8 
 
 		 170 aa  110  5e-24  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  44.72 
 
 		 234 aa  110  5e-24  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_010338  Caul_4546  two component transcriptional regulator  45.45 
 
 		 230 aa  110  5e-24  Caulobacter sp. K31  Bacteria  normal  1  normal  0.281853 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  48.8 
 
 		 239 aa  110  6e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_0721  two component transcriptional regulator, winged helix family  46.83 
 
 		 233 aa  110  6e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.811558  normal  1 
 
 
-
 
NC_011830  Dhaf_1285  two component transcriptional regulator, winged helix family  48.36 
 
 		 234 aa  110  6e-24  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.477652  n/a   
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  48.33 
 
 		 231 aa  110  6e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  41.46 
 
 		 227 aa  110  6e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal  1 
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  47.9 
 
 		 232 aa  110  6e-24  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5511  two component transcriptional regulator  47.06 
 
 		 236 aa  110  6e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  normal  0.567595 
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  47.97 
 
 		 235 aa  110  7.000000000000001e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_2564  DNA-binding response regulator  46.77 
 
 		 231 aa  110  8.000000000000001e-24  Bacillus cereus ATCC 10987  Bacteria  normal  0.0589521  n/a   
 
 
-
 
NC_005945  BAS2385  DNA-binding response regulator  47.15 
 
 		 231 aa  110  8.000000000000001e-24  Bacillus anthracis str. Sterne  Bacteria  normal  0.534853  n/a   
 
 
-
 
NC_005957  BT9727_2341  DNA-binding response regulator  47.15 
 
 		 231 aa  110  8.000000000000001e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000166477  n/a   
 
 
-
 
NC_006274  BCZK2302  DNA-binding response regulator  46.77 
 
 		 231 aa  110  8.000000000000001e-24  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_2561  DNA-binding response regulator  47.15 
 
 		 231 aa  110  8.000000000000001e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.630654  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  44.54 
 
 		 230 aa  110  8.000000000000001e-24  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_008148  Rxyl_2983  two component transcriptional regulator  46.72 
 
 		 228 aa  110  8.000000000000001e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_2574  DNA-binding response regulator  47.15 
 
 		 231 aa  110  8.000000000000001e-24  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000040017 
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  48 
 
 		 239 aa  110  9e-24  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  48 
 
 		 239 aa  110  9e-24  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  48 
 
 		 239 aa  110  9e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  48 
 
 		 239 aa  110  9e-24  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  48 
 
 		 239 aa  110  9e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  48 
 
 		 239 aa  110  9e-24  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  48 
 
 		 239 aa  110  9e-24  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
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