More than 300 homologs were found in PanDaTox collection
for query gene Lcho_0237 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010524  Lcho_0237  response regulator receiver protein  100 
 
 		 124 aa  248  1e-65  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000555979 
 
 
-
 
NC_007908  Rfer_3778  response regulator receiver domain-containing protein  71.77 
 
 		 124 aa  184  3e-46  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_4150  response regulator receiver protein  63.41 
 
 		 125 aa  178  2.9999999999999997e-44  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.583085 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  66.94 
 
 		 122 aa  172  9.999999999999999e-43  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  70 
 
 		 123 aa  171  1.9999999999999998e-42  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_2427  response regulator receiver protein  62.39 
 
 		 159 aa  155  3e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.468058 
 
 
-
 
NC_008789  Hhal_1901  response regulator receiver protein  59.17 
 
 		 125 aa  154  4e-37  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008688  Pden_5113  response regulator receiver protein  55.83 
 
 		 121 aa  148  3e-35  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_0669  response regulator receiver protein  54.92 
 
 		 123 aa  146  8e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_2029  response regulator receiver protein  53.23 
 
 		 124 aa  137  3.9999999999999997e-32  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.371136 
 
 
-
 
NC_013730  Slin_2044  response regulator receiver protein  50.41 
 
 		 123 aa  133  9.999999999999999e-31  Spirosoma linguale DSM 74  Bacteria  normal  0.0300859  normal  0.405857 
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  47.9 
 
 		 132 aa  126  1.0000000000000001e-28  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  52.5 
 
 		 234 aa  125  1.0000000000000001e-28  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  52.5 
 
 		 234 aa  125  1.0000000000000001e-28  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  52.5 
 
 		 236 aa  124  5e-28  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_008340  Mlg_2054  response regulator receiver protein  48.78 
 
 		 140 aa  122  1e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.0880044 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  46.61 
 
 		 170 aa  117  3.9999999999999996e-26  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  51.67 
 
 		 230 aa  117  4.9999999999999996e-26  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_007802  Jann_2695  response regulator receiver domain-containing protein  50.86 
 
 		 186 aa  116  9.999999999999999e-26  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.00269866  normal  0.78823 
 
 
-
 
NC_007413  Ava_4431  response regulator receiver domain-containing protein  44.72 
 
 		 125 aa  115  1.9999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  47.11 
 
 		 239 aa  115  1.9999999999999998e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  50.43 
 
 		 229 aa  114  6.9999999999999995e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  0.834843 
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  47.5 
 
 		 233 aa  113  8.999999999999998e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_009952  Dshi_1406  response regulator receiver protein  42.02 
 
 		 121 aa  112  1.0000000000000001e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0894387  normal  1 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  48.33 
 
 		 232 aa  113  1.0000000000000001e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  47.5 
 
 		 233 aa  112  2.0000000000000002e-24  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_0504  response regulator receiver protein  46.15 
 
 		 129 aa  112  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0548558  normal  0.11151 
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_007493  RSP_0573  response regulator receiver protein  45.3 
 
 		 129 aa  112  2.0000000000000002e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.087024  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  47.5 
 
 		 233 aa  112  2.0000000000000002e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  47.5 
 
 		 233 aa  112  2.0000000000000002e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  46.67 
 
 		 235 aa  112  2.0000000000000002e-24  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  45.83 
 
 		 231 aa  112  2.0000000000000002e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_2226  response regulator receiver protein  45.3 
 
 		 129 aa  112  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.561592  normal  0.814785 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  46.67 
 
 		 235 aa  111  3e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  50 
 
 		 235 aa  111  3e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  44.54 
 
 		 231 aa  111  3e-24  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  48.33 
 
 		 225 aa  111  4.0000000000000004e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  47.5 
 
 		 227 aa  111  4.0000000000000004e-24  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  49.17 
 
 		 237 aa  110  5e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_1071  two component transcriptional regulator, winged helix family  52 
 
 		 238 aa  110  7.000000000000001e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  46.67 
 
 		 230 aa  110  7.000000000000001e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.305183 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  48.33 
 
 		 236 aa  110  7.000000000000001e-24  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  48.33 
 
 		 234 aa  109  1.0000000000000001e-23  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  44.54 
 
 		 231 aa  109  1.0000000000000001e-23  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  46.61 
 
 		 226 aa  109  1.0000000000000001e-23  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_002936  DET1058  DNA-binding response regulator  48.33 
 
 		 227 aa  108  2.0000000000000002e-23  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.000187393  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  43.97 
 
 		 235 aa  109  2.0000000000000002e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  44.44 
 
 		 230 aa  108  2.0000000000000002e-23  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  48.33 
 
 		 238 aa  108  2.0000000000000002e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  48.33 
 
 		 239 aa  108  2.0000000000000002e-23  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.000130788 
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  46.15 
 
 		 230 aa  108  3e-23  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  47.11 
 
 		 235 aa  108  3e-23  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  0.203788 
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  45.83 
 
 		 231 aa  107  4.0000000000000004e-23  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  46.55 
 
 		 230 aa  107  4.0000000000000004e-23  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  46.55 
 
 		 230 aa  107  4.0000000000000004e-23  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_926  two-component system, OmpR family, response regulator  48.33 
 
 		 227 aa  107  4.0000000000000004e-23  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00200634  n/a   
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  48.72 
 
 		 226 aa  107  5e-23  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_013093  Amir_6208  two component transcriptional regulator, winged helix family  45 
 
 		 226 aa  107  5e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  45.83 
 
 		 235 aa  107  6e-23  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  43.33 
 
 		 1127 aa  107  7.000000000000001e-23  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_6507  two component transcriptional regulator  48.72 
 
 		 270 aa  107  8.000000000000001e-23  Frankia sp. EAN1pec  Bacteria  normal  0.0763131  normal  0.20607 
 
 
-
 
NC_009455  DehaBAV1_0937  two component transcriptional regulator  48.33 
 
 		 227 aa  107  8.000000000000001e-23  Dehalococcoides sp. BAV1  Bacteria  normal  0.834094  n/a   
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  38.46 
 
 		 126 aa  106  9.000000000000001e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.102048 
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  47.41 
 
 		 326 aa  106  9.000000000000001e-23  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  46.55 
 
 		 242 aa  106  9.000000000000001e-23  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_013517  Sterm_2324  two component transcriptional regulator, winged helix family  43.33 
 
 		 223 aa  106  1e-22  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.237639  n/a   
 
 
-
 
NC_013947  Snas_5345  two component transcriptional regulator, winged helix family  45.16 
 
 		 230 aa  106  1e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.264155 
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  46.67 
 
 		 227 aa  105  1e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  42.5 
 
 		 234 aa  106  1e-22  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_011830  Dhaf_4687  two component transcriptional regulator, winged helix family  47.01 
 
 		 230 aa  106  1e-22  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000000280381  n/a   
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  43.59 
 
 		 232 aa  105  2e-22  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  44.44 
 
 		 232 aa  105  2e-22  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B2796  DNA-binding response regulator  45.83 
 
 		 231 aa  105  2e-22  Bacillus cereus G9842  Bacteria  normal  0.512352  hitchhiker  0.00000533196 
 
 
-
 
NC_011725  BCB4264_A2526  DNA-binding response regulator  45.83 
 
 		 231 aa  105  2e-22  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_2564  DNA-binding response regulator  45 
 
 		 231 aa  104  3e-22  Bacillus cereus ATCC 10987  Bacteria  normal  0.0589521  n/a   
 
 
-
 
NC_006274  BCZK2302  DNA-binding response regulator  45 
 
 		 231 aa  104  3e-22  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_0791  response regulator receiver domain-containing protein  45 
 
 		 125 aa  105  3e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  1  hitchhiker  0.00778943 
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  42.98 
 
 		 236 aa  105  3e-22  Magnetococcus sp. MC-1  Bacteria  normal  1  decreased coverage  0.00391258 
 
 
-
 
NC_013739  Cwoe_5515  response regulator receiver protein  44.54 
 
 		 134 aa  105  3e-22  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  47.41 
 
 		 227 aa  104  3e-22  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  44.17 
 
 		 310 aa  104  3e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  44.17 
 
 		 241 aa  104  4e-22  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
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