More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_1895 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  100 
 
 
288 aa  582  1.0000000000000001e-165  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  97.91 
 
 
287 aa  573  1.0000000000000001e-163  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  97.57 
 
 
288 aa  572  1.0000000000000001e-162  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  97.22 
 
 
303 aa  569  1e-161  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  88.5 
 
 
288 aa  523  1e-147  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  89.08 
 
 
287 aa  520  1e-146  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  85.42 
 
 
288 aa  512  1e-144  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  85.42 
 
 
288 aa  512  1e-144  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  76.39 
 
 
289 aa  460  9.999999999999999e-129  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  73.52 
 
 
286 aa  426  1e-118  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  68.64 
 
 
292 aa  422  1e-117  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  71.38 
 
 
296 aa  410  1e-114  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  67.94 
 
 
290 aa  411  1e-114  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  67.94 
 
 
290 aa  411  1e-114  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  70.32 
 
 
296 aa  409  1e-113  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  70.32 
 
 
296 aa  409  1e-113  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  68.55 
 
 
294 aa  407  1.0000000000000001e-112  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  68.29 
 
 
295 aa  400  9.999999999999999e-111  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  73.48 
 
 
294 aa  396  1e-109  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  67.25 
 
 
290 aa  397  1e-109  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  72.34 
 
 
294 aa  392  1e-108  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  71.28 
 
 
296 aa  394  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  68.77 
 
 
288 aa  388  1e-107  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  64.34 
 
 
290 aa  387  1e-107  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  71.37 
 
 
298 aa  386  1e-106  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  70.34 
 
 
297 aa  385  1e-106  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  63.48 
 
 
300 aa  381  1e-105  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  69.82 
 
 
295 aa  382  1e-105  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  63.48 
 
 
300 aa  381  1e-105  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  66.9 
 
 
288 aa  383  1e-105  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  69.58 
 
 
298 aa  378  1e-104  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  63.82 
 
 
300 aa  380  1e-104  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  63.82 
 
 
300 aa  380  1e-104  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  70.61 
 
 
298 aa  379  1e-104  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  64.01 
 
 
300 aa  375  1e-103  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  63.29 
 
 
287 aa  373  1e-102  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  72.41 
 
 
297 aa  373  1e-102  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  66.78 
 
 
319 aa  373  1e-102  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  65.12 
 
 
289 aa  371  1e-102  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  64.08 
 
 
287 aa  370  1e-101  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  67.82 
 
 
297 aa  369  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  68.29 
 
 
288 aa  369  1e-101  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  66.31 
 
 
298 aa  370  1e-101  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  66.2 
 
 
288 aa  361  7.0000000000000005e-99  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  69.85 
 
 
296 aa  360  1e-98  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  68.32 
 
 
298 aa  359  3e-98  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  64.56 
 
 
288 aa  355  2.9999999999999997e-97  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  52.31 
 
 
289 aa  306  4.0000000000000004e-82  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  41.9 
 
 
287 aa  206  5e-52  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
314 aa  129  4.0000000000000003e-29  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  30.08 
 
 
288 aa  127  2.0000000000000002e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
315 aa  123  3e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
291 aa  121  9.999999999999999e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  34.56 
 
 
311 aa  120  1.9999999999999998e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
318 aa  120  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  30.66 
 
 
298 aa  120  3e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
289 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
289 aa  120  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
289 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
289 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  29.31 
 
 
318 aa  119  6e-26  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  29 
 
 
309 aa  119  6e-26  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
313 aa  119  7e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  32.2 
 
 
289 aa  118  9.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
294 aa  118  9.999999999999999e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  26.92 
 
 
427 aa  117  1.9999999999999998e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
289 aa  117  1.9999999999999998e-25  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  27.87 
 
 
322 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  29.88 
 
 
300 aa  116  3.9999999999999997e-25  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
294 aa  114  2.0000000000000002e-24  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  28.36 
 
 
280 aa  114  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
312 aa  114  2.0000000000000002e-24  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
299 aa  113  3e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
435 aa  113  4.0000000000000004e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  28.14 
 
 
310 aa  113  4.0000000000000004e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_009485  BBta_2540  ABC transporter permease  32.96 
 
 
306 aa  112  7.000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  27.64 
 
 
318 aa  112  9e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013739  Cwoe_0172  binding-protein-dependent transport systems inner membrane component  28.98 
 
 
324 aa  111  1.0000000000000001e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
292 aa  110  3e-23  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  28.29 
 
 
286 aa  110  4.0000000000000004e-23  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  32.6 
 
 
309 aa  109  5e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
306 aa  109  6e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  30.64 
 
 
287 aa  108  7.000000000000001e-23  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  28.95 
 
 
293 aa  108  1e-22  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
308 aa  108  1e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4077  binding-protein-dependent transport systems inner membrane component  28.68 
 
 
317 aa  107  2e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.140823  normal  0.731226 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  25.99 
 
 
291 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  25.27 
 
 
312 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  27.09 
 
 
299 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
295 aa  107  2e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
295 aa  107  3e-22  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  26.32 
 
 
296 aa  107  3e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  26.35 
 
 
291 aa  106  4e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  28.09 
 
 
309 aa  106  4e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  27.02 
 
 
319 aa  106  4e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
NC_011886  Achl_2900  binding-protein-dependent transport systems inner membrane component  28.32 
 
 
295 aa  106  5e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011899  Hore_15030  binding-protein-dependent transport systems inner membrane component  27.84 
 
 
289 aa  106  5e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0201  binding-protein-dependent transport systems inner membrane component  26.83 
 
 
294 aa  106  6e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
356 aa  105  6e-22  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_013757  Gobs_3933  binding-protein-dependent transport systems inner membrane component  25.53 
 
 
320 aa  105  6e-22  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.292649  n/a   
 
 
-
 
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