More than 300 homologs were found in PanDaTox collection
for query gene Pnec_0929 on replicon NC_010531
Organism: Polynucleobacter necessarius subsp. necessarius STIR1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  66.47 
 
 
682 aa  875    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  68.51 
 
 
682 aa  898    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  67.34 
 
 
691 aa  904    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  57.27 
 
 
667 aa  731    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  57.06 
 
 
667 aa  684    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  58.91 
 
 
667 aa  749    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  56.02 
 
 
652 aa  707    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  53.46 
 
 
668 aa  641    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  55.01 
 
 
668 aa  669    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  57.45 
 
 
685 aa  759    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  57.79 
 
 
669 aa  735    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  56.26 
 
 
684 aa  693    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  67.01 
 
 
667 aa  863    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  69.23 
 
 
682 aa  905    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  58.47 
 
 
667 aa  749    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  52.79 
 
 
669 aa  673    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  55.23 
 
 
671 aa  690    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  58.24 
 
 
695 aa  729    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  57.21 
 
 
671 aa  718    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  56.26 
 
 
667 aa  692    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  56.47 
 
 
673 aa  697    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  56.77 
 
 
681 aa  720    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  57.19 
 
 
662 aa  736    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  56.83 
 
 
671 aa  701    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  58.26 
 
 
666 aa  729    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  68.71 
 
 
675 aa  918    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  56.65 
 
 
673 aa  705    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  68.94 
 
 
682 aa  902    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  55.7 
 
 
680 aa  718    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  66.33 
 
 
684 aa  869    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  69.63 
 
 
662 aa  915    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  57.79 
 
 
673 aa  722    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  94.4 
 
 
678 aa  1320    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  57.42 
 
 
671 aa  715    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  66.33 
 
 
682 aa  877    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  56.7 
 
 
671 aa  696    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  65.07 
 
 
696 aa  865    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  58.32 
 
 
671 aa  750    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  53.23 
 
 
669 aa  676    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  100 
 
 
678 aa  1397    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  56.91 
 
 
691 aa  695    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  56.7 
 
 
671 aa  717    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  55.41 
 
 
671 aa  699    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  56.53 
 
 
667 aa  702    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  69.14 
 
 
682 aa  907    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  56.65 
 
 
676 aa  741    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  54.13 
 
 
668 aa  700    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  57.44 
 
 
675 aa  729    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  57.16 
 
 
670 aa  733    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  59.06 
 
 
666 aa  751    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  54.24 
 
 
670 aa  699    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  58.41 
 
 
666 aa  731    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  58.11 
 
 
660 aa  728    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  58.47 
 
 
667 aa  742    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  67.25 
 
 
682 aa  889    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  50 
 
 
669 aa  623  1e-177  Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  47.04 
 
 
655 aa  578  1.0000000000000001e-163  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  44.01 
 
 
691 aa  554  1e-156  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  45.41 
 
 
656 aa  555  1e-156  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  56.56 
 
 
498 aa  525  1e-148  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  43.22 
 
 
689 aa  528  1e-148  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  46.15 
 
 
667 aa  513  1e-144  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  57.01 
 
 
493 aa  515  1e-144  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_009656  PSPA7_2263  putative biotin carboxylase/biotin carboxyl carrier protein  43.93 
 
 
661 aa  511  1e-143  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_0794  pyruvate carboxylase subunit A  53.93 
 
 
499 aa  511  1e-143  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_008463  PA14_26670  putative biotin carboxylase/biotin carboxyl carrier protein  43.64 
 
 
661 aa  509  1e-143  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.795664  normal 
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  54.3 
 
 
448 aa  508  9.999999999999999e-143  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  54.3 
 
 
446 aa  506  9.999999999999999e-143  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  42.54 
 
 
653 aa  508  9.999999999999999e-143  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  56.33 
 
 
450 aa  506  9.999999999999999e-143  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  42.43 
 
 
665 aa  502  1e-141  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_009674  Bcer98_2877  acetyl-CoA carboxylase biotin carboxylase subunit  55.73 
 
 
450 aa  503  1e-141  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0201328  n/a   
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  54.3 
 
 
446 aa  502  1e-141  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  43.86 
 
 
681 aa  501  1e-140  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  53.62 
 
 
446 aa  499  1e-140  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_009483  Gura_1826  acetyl-CoA carboxylase, biotin carboxylase  53.85 
 
 
446 aa  500  1e-140  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136846  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4036  acetyl-CoA carboxylase biotin carboxylase subunit  55.28 
 
 
450 aa  501  1e-140  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.704131  n/a   
 
 
-
 
NC_008262  CPR_1142  biotin carboxylase  54.83 
 
 
450 aa  499  1e-140  Clostridium perfringens SM101  Bacteria  normal  0.123284  n/a   
 
 
-
 
NC_013132  Cpin_1521  acetyl-CoA carboxylase, biotin carboxylase  55.43 
 
 
494 aa  499  1e-140  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_4257  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4088  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus anthracis str. Sterne  Bacteria  normal  0.857492  n/a   
 
 
-
 
NC_005957  BT9727_3926  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3937  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4294  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0940  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus cereus G9842  Bacteria  normal  normal  0.0173318 
 
 
-
 
NC_011773  BCAH820_4204  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000322811 
 
 
-
 
NC_007530  GBAA_4408  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  54.17 
 
 
661 aa  495  1e-139  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_013061  Phep_3289  acetyl-CoA carboxylase, biotin carboxylase  54.94 
 
 
496 aa  497  1e-139  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.191323 
 
 
-
 
NC_013037  Dfer_3259  Carbamoyl-phosphate synthase L chain ATP- binding  53.63 
 
 
501 aa  497  1e-139  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0256085 
 
 
-
 
NC_009635  Maeo_1006  pyruvate carboxylase subunit A  54.87 
 
 
509 aa  497  1e-139  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  43.92 
 
 
666 aa  498  1e-139  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_011658  BCAH187_A4314  acetyl-CoA carboxylase biotin carboxylase subunit  55.06 
 
 
450 aa  498  1e-139  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1330  biotin carboxylase  54.38 
 
 
450 aa  495  1e-139  Clostridium perfringens ATCC 13124  Bacteria  normal  0.110038  n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  41.54 
 
 
654 aa  493  9.999999999999999e-139  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.43 
 
 
666 aa  495  9.999999999999999e-139  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0521  acetyl-CoA carboxylase, biotin carboxylase  52.7 
 
 
448 aa  494  9.999999999999999e-139  Clostridium phytofermentans ISDg  Bacteria  normal  0.0922671  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  43.61 
 
 
662 aa  492  9.999999999999999e-139  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.32 
 
 
672 aa  492  9.999999999999999e-139  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  42.63 
 
 
643 aa  494  9.999999999999999e-139  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
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