More than 300 homologs were found in PanDaTox collection
for query gene Pmen_4314 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_4314  response regulator receiver protein  100 
 
 
128 aa  259  8.999999999999999e-69  Pseudomonas mendocina ymp  Bacteria  normal  0.7882  normal  0.646224 
 
 
-
 
NC_007948  Bpro_0213  response regulator receiver domain-containing protein  62.6 
 
 
128 aa  160  5.0000000000000005e-39  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0840  response regulator receiver protein  59.84 
 
 
132 aa  153  9e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4105  response regulator receiver domain-containing protein  51.72 
 
 
229 aa  118  3e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0374743 
 
 
-
 
NC_007413  Ava_0239  response regulator receiver domain-containing protein  47.15 
 
 
132 aa  116  9e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3504  response regulator receiver protein  51.3 
 
 
127 aa  112  1.0000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0856  response regulator receiver protein  50 
 
 
126 aa  105  2e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0534273 
 
 
-
 
NC_011729  PCC7424_4550  response regulator receiver protein  44.92 
 
 
127 aa  104  4e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009664  Krad_0333  response regulator receiver protein  48.7 
 
 
126 aa  103  1e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.139071  normal 
 
 
-
 
NC_008347  Mmar10_2120  response regulator receiver protein  41.8 
 
 
131 aa  100  5e-21  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2946  response regulator receiver protein  43.22 
 
 
124 aa  95.9  2e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1161  response regulator receiver protein  40.5 
 
 
126 aa  95.5  2e-19  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.606485 
 
 
-
 
NC_007413  Ava_2419  response regulator receiver domain-containing protein  44.35 
 
 
124 aa  94.4  4e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.730066  hitchhiker  0.0000120546 
 
 
-
 
NC_013757  Gobs_1519  response regulator receiver protein  45.53 
 
 
125 aa  94.4  4e-19  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.043846  n/a   
 
 
-
 
NC_013161  Cyan8802_3719  response regulator receiver protein  41.18 
 
 
123 aa  90.5  7e-18  Cyanothece sp. PCC 8802  Bacteria  normal  0.173125  normal  0.315103 
 
 
-
 
NC_011726  PCC8801_3665  response regulator receiver protein  41.18 
 
 
123 aa  90.5  7e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1627  response regulator receiver domain-containing protein  37.7 
 
 
125 aa  90.1  1e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.113437 
 
 
-
 
NC_014248  Aazo_4227  response regulator receiver protein  40 
 
 
130 aa  89.4  1e-17  'Nostoc azollae' 0708  Bacteria  normal  0.482069  n/a   
 
 
-
 
NC_011729  PCC7424_3993  response regulator receiver protein  36.75 
 
 
124 aa  87  7e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0199898 
 
 
-
 
NC_009972  Haur_2343  two component transcriptional regulator  41.46 
 
 
243 aa  86.7  1e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00929975  n/a   
 
 
-
 
NC_013501  Rmar_2360  response regulator receiver protein  38.98 
 
 
523 aa  84.7  4e-16  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1554  two component transcriptional regulator, winged helix family  39.5 
 
 
229 aa  84.3  6e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00709514 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  38.66 
 
 
225 aa  84  7e-16  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  39.02 
 
 
216 aa  83.6  8e-16  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  39.02 
 
 
216 aa  83.6  8e-16  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  38.66 
 
 
225 aa  83.2  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_009012  Cthe_3069  two component transcriptional regulator  39.66 
 
 
230 aa  82.8  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.0000000467461  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  37.7 
 
 
224 aa  82.8  0.000000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3942  response regulator receiver protein  40.34 
 
 
163 aa  82  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2625  two component transcriptional regulator, winged helix family  37.7 
 
 
237 aa  82.8  0.000000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000254862  normal 
 
 
-
 
NC_011729  PCC7424_1722  response regulator receiver protein  36.44 
 
 
123 aa  82  0.000000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00000000000000956357 
 
 
-
 
NC_014165  Tbis_3089  winged helix family two component transcriptional regulator  39.5 
 
 
224 aa  82  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.136258  normal 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  37.4 
 
 
225 aa  81.6  0.000000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  36.36 
 
 
231 aa  81.6  0.000000000000003  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  36.36 
 
 
229 aa  81.3  0.000000000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  38.46 
 
 
215 aa  81.3  0.000000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_013595  Sros_8520  response regulator receiver protein  37.82 
 
 
224 aa  81.3  0.000000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.697367 
 
 
-
 
NC_003909  BCE_2041  DNA-binding response regulator  37.7 
 
 
225 aa  80.9  0.000000000000006  Bacillus cereus ATCC 10987  Bacteria  normal  0.0972255  n/a   
 
 
-
 
NC_011830  Dhaf_2918  two component transcriptional regulator, winged helix family  41.88 
 
 
232 aa  80.9  0.000000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3814  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  38.21 
 
 
1131 aa  80.5  0.000000000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.257486 
 
 
-
 
NC_005945  BAS1816  DNA-binding response regulator  38.46 
 
 
254 aa  80.1  0.000000000000009  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2062  DNA-binding response regulator  37.7 
 
 
225 aa  80.1  0.000000000000009  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000169038  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  35.54 
 
 
231 aa  80.1  0.000000000000009  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_006274  BCZK1772  response regulator  38.79 
 
 
254 aa  79.7  0.00000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1991  DNA-binding response regulator  38.79 
 
 
254 aa  79.7  0.00000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.9362699999999994e-45 
 
 
-
 
NC_007530  GBAA_1955  DNA-binding response regulator  37.5 
 
 
228 aa  79.7  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0452  response regulator receiver protein  35.54 
 
 
122 aa  79.3  0.00000000000002  Thermotoga petrophila RKU-1  Bacteria  normal  0.17051  n/a   
 
 
-
 
NC_010483  TRQ2_0467  response regulator receiver protein  35.54 
 
 
122 aa  79  0.00000000000002  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  38.46 
 
 
242 aa  79  0.00000000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  36.89 
 
 
242 aa  79  0.00000000000002  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_007577  PMT9312_0171  two component LuxR family transcriptional regulator  36.89 
 
 
242 aa  79.3  0.00000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1962  DNA-binding response regulator  38.33 
 
 
225 aa  79.3  0.00000000000002  Bacillus cereus B4264  Bacteria  normal  0.597164  n/a   
 
 
-
 
NC_011772  BCG9842_B3366  DNA-binding response regulator  38.33 
 
 
225 aa  79.3  0.00000000000002  Bacillus cereus G9842  Bacteria  normal  0.166078  hitchhiker  0.00000000000000126215 
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  38.46 
 
 
242 aa  79  0.00000000000002  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  39.17 
 
 
231 aa  78.6  0.00000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_1790  response regulator  37.93 
 
 
254 aa  78.6  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0306127  n/a   
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  40.65 
 
 
237 aa  78.6  0.00000000000003  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0195  two component transcriptional regulator  39.84 
 
 
243 aa  78.6  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00716616 
 
 
-
 
NC_011898  Ccel_1714  two component transcriptional regulator, winged helix family  35.71 
 
 
234 aa  78.6  0.00000000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.233786  n/a   
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  40.35 
 
 
312 aa  78.6  0.00000000000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  35.2 
 
 
229 aa  78.6  0.00000000000003  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  37.7 
 
 
390 aa  78.6  0.00000000000003  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  35.59 
 
 
229 aa  77.8  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_007778  RPB_3967  response regulator receiver domain-containing protein  35.9 
 
 
253 aa  78.2  0.00000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.365316 
 
 
-
 
NC_009767  Rcas_4344  two component transcriptional regulator  39.84 
 
 
239 aa  78.2  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.325933  normal  0.345767 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  33.87 
 
 
229 aa  77.8  0.00000000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_009976  P9211_01481  two-component response regulator  34.45 
 
 
248 aa  77.8  0.00000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  36.07 
 
 
242 aa  78.2  0.00000000000004  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  36.89 
 
 
230 aa  77.4  0.00000000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  34.13 
 
 
231 aa  77.8  0.00000000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  34.13 
 
 
231 aa  77.8  0.00000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  38.52 
 
 
245 aa  77.4  0.00000000000006  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_011831  Cagg_1181  two component transcriptional regulator, winged helix family  38.52 
 
 
234 aa  77.4  0.00000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00335068 
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  32.79 
 
 
228 aa  77.4  0.00000000000006  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  39.5 
 
 
242 aa  77  0.00000000000007  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_05730  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  40 
 
 
242 aa  77.4  0.00000000000007  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.587783  normal 
 
 
-
 
NC_010184  BcerKBAB4_1824  two component transcriptional regulator  35.83 
 
 
225 aa  77  0.00000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.529032  n/a   
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  36.59 
 
 
236 aa  77  0.00000000000008  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  32.52 
 
 
239 aa  77  0.00000000000008  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1744  response regulator receiver protein  35.9 
 
 
229 aa  77  0.00000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  37.7 
 
 
245 aa  76.3  0.0000000000001  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  35.54 
 
 
235 aa  76.3  0.0000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  36.8 
 
 
229 aa  76.6  0.0000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_009767  Rcas_1176  two component transcriptional regulator  35.54 
 
 
229 aa  76.3  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.149936 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  34.17 
 
 
170 aa  76.3  0.0000000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  40.17 
 
 
248 aa  76.6  0.0000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4011  two component transcriptional regulator, winged helix family  35.54 
 
 
236 aa  76.6  0.0000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0268606  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  34.45 
 
 
314 aa  75.9  0.0000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  34.15 
 
 
240 aa  75.9  0.0000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  38.14 
 
 
443 aa  75.9  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  32.81 
 
 
231 aa  75.5  0.0000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_007973  Rmet_1652  DNA-binding response regulator CreB  37.7 
 
 
232 aa  75.5  0.0000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  37.82 
 
 
231 aa  75.9  0.0000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  33.88 
 
 
243 aa  75.5  0.0000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  36.59 
 
 
247 aa  75.9  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  38.6 
 
 
305 aa  75.9  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_2099  response regulator receiver modulated diguanylate phosphodiesterase  35 
 
 
402 aa  75.9  0.0000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.316821 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  38.05 
 
 
452 aa  75.5  0.0000000000002  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  35.77 
 
 
239 aa  75.5  0.0000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_014165  Tbis_0845  response regulator receiver protein  36.13 
 
 
125 aa  75.5  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.455865  normal  0.167506 
 
 
-
 
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