More than 300 homologs were found in PanDaTox collection
for query gene PC1_2920 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_1358  binding-protein-dependent transport systems inner membrane component  94.29 
 
 
525 aa  852    Pectobacterium wasabiae WPP163  Bacteria  normal  0.41308  n/a   
 
 
-
 
NC_012917  PC1_2920  binding-protein-dependent transport systems inner membrane component  100 
 
 
525 aa  1016    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.905105  n/a   
 
 
-
 
NC_010465  YPK_1462  binding-protein-dependent transport systems inner membrane component  70.42 
 
 
528 aa  639    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2520  binding-protein-dependent transport systems inner membrane component  73.55 
 
 
530 aa  661    Dickeya zeae Ech1591  Bacteria  normal  0.034918  n/a   
 
 
-
 
NC_009708  YpsIP31758_1349  iron(III) ABC transporter, permease protein  70.61 
 
 
528 aa  639    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2711  iron(III)-transport system permease  69.51 
 
 
528 aa  636    Yersinia pestis Angola  Bacteria  normal  0.0924971  normal  0.0430816 
 
 
-
 
NC_009832  Spro_2535  binding-protein-dependent transport systems inner membrane component  71.94 
 
 
527 aa  617  1e-175  Serratia proteamaculans 568  Bacteria  normal  0.604854  normal 
 
 
-
 
NC_012880  Dd703_2429  binding-protein-dependent transport systems inner membrane component  71.28 
 
 
527 aa  595  1e-169  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2838  binding-protein dependent transport system inner membrane protein  69.62 
 
 
531 aa  594  1e-168  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3782  binding-protein-dependent transport systems inner membrane component  60.59 
 
 
526 aa  571  1e-161  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.865045 
 
 
-
 
NC_012850  Rleg_4111  binding-protein-dependent transport systems inner membrane component  60.59 
 
 
526 aa  565  1e-160  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.43356  normal 
 
 
-
 
NC_008541  Arth_0606  binding-protein-dependent transport systems inner membrane component  54.03 
 
 
536 aa  527  1e-148  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_6135  ABC transporter membrane spanning protein  59.17 
 
 
513 aa  505  9.999999999999999e-143  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1981  binding-protein-dependent transport systems inner membrane component  57.28 
 
 
526 aa  489  1e-137  Mycobacterium sp. MCS  Bacteria  normal  0.0924311  n/a   
 
 
-
 
NC_008705  Mkms_2027  binding-protein-dependent transport systems inner membrane component  57.28 
 
 
526 aa  489  1e-137  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1961  binding-protein-dependent transport systems inner membrane component  56.89 
 
 
526 aa  487  1e-136  Mycobacterium sp. JLS  Bacteria  normal  0.80009  normal 
 
 
-
 
NC_011886  Achl_0735  binding-protein-dependent transport systems inner membrane component  54.58 
 
 
530 aa  468  9.999999999999999e-131  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009338  Mflv_2857  binding-protein-dependent transport systems inner membrane component  55.94 
 
 
536 aa  441  9.999999999999999e-123  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.145655  normal 
 
 
-
 
NC_008703  Mkms_5749  binding-protein-dependent transport systems inner membrane component  54.11 
 
 
533 aa  419  1e-116  Mycobacterium sp. KMS  Bacteria  normal  normal  0.97601 
 
 
-
 
NC_007777  Francci3_1591  binding-protein-dependent transport systems inner membrane component  51.14 
 
 
518 aa  407  1.0000000000000001e-112  Frankia sp. CcI3  Bacteria  normal  0.543872  normal  0.457937 
 
 
-
 
NC_009921  Franean1_5339  binding-protein-dependent transport systems inner membrane component  48.39 
 
 
509 aa  384  1e-105  Frankia sp. EAN1pec  Bacteria  normal  0.992663  normal  0.953855 
 
 
-
 
NC_013757  Gobs_3649  binding-protein-dependent transport systems inner membrane component  50.83 
 
 
500 aa  384  1e-105  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.974086  n/a   
 
 
-
 
NC_008699  Noca_2021  binding-protein-dependent transport systems inner membrane component  46.76 
 
 
522 aa  358  9e-98  Nocardioides sp. JS614  Bacteria  normal  0.0398286  n/a   
 
 
-
 
NC_010676  Bphyt_4827  binding-protein-dependent transport systems inner membrane component  41.87 
 
 
534 aa  292  9e-78  Burkholderia phytofirmans PsJN  Bacteria  normal  0.232577  normal  0.0312056 
 
 
-
 
NC_007952  Bxe_B1836  ABC Fe+3 transporter, inner membrane subunit  41.52 
 
 
534 aa  289  9e-77  Burkholderia xenovorans LB400  Bacteria  normal  0.374127  normal  0.533271 
 
 
-
 
NC_008463  PA14_62010  putative iron ABC transporter, permease protein  39.74 
 
 
512 aa  281  2e-74  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0428593 
 
 
-
 
NC_007510  Bcep18194_A3949  ABC Fe3+ transporter, inner membrane subunit  42.63 
 
 
532 aa  280  5e-74  Burkholderia sp. 383  Bacteria  normal  0.305187  normal  0.0483056 
 
 
-
 
NC_002947  PP_4882  binding-protein-dependent transport systems inner membrane component  38.65 
 
 
521 aa  277  3e-73  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4938  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
521 aa  275  1.0000000000000001e-72  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000107301 
 
 
-
 
NC_009512  Pput_4762  binding-protein-dependent transport systems inner membrane component  38.45 
 
 
521 aa  275  1.0000000000000001e-72  Pseudomonas putida F1  Bacteria  normal  0.109676  normal  0.504386 
 
 
-
 
NC_010501  PputW619_4672  binding-protein-dependent transport systems inner membrane component  38.65 
 
 
521 aa  268  2e-70  Pseudomonas putida W619  Bacteria  normal  normal  0.548778 
 
 
-
 
NC_007492  Pfl01_0530  binding-protein dependent transport system inner membrane protein  40.09 
 
 
521 aa  256  6e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.162719 
 
 
-
 
NC_008726  Mvan_3092  binding-protein-dependent transport systems inner membrane component  40.09 
 
 
514 aa  255  1.0000000000000001e-66  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.923953  normal  0.633646 
 
 
-
 
NC_009338  Mflv_3362  binding-protein-dependent transport systems inner membrane component  39.44 
 
 
511 aa  251  2e-65  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.269197  normal  0.697364 
 
 
-
 
NC_013235  Namu_1665  binding-protein-dependent transport systems inner membrane component  37.63 
 
 
515 aa  246  6e-64  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000100634  normal  0.0519495 
 
 
-
 
NC_013131  Caci_7420  binding-protein-dependent transport systems inner membrane component  40.89 
 
 
503 aa  245  9.999999999999999e-64  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.0090372  normal 
 
 
-
 
NC_012803  Mlut_06270  ABC-type Fe3+ transport system, permease component  38.35 
 
 
515 aa  244  3e-63  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0952696  n/a   
 
 
-
 
NC_013595  Sros_8129  iron ABC transporter, permease protein  37.92 
 
 
502 aa  241  2e-62  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.161316 
 
 
-
 
NC_009972  Haur_1721  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
530 aa  227  5.0000000000000005e-58  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.353247  n/a   
 
 
-
 
NC_013946  Mrub_2271  binding-protein-dependent transport systems inner membrane component  35.97 
 
 
523 aa  209  9e-53  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.0000425777 
 
 
-
 
NC_011831  Cagg_2417  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
536 aa  207  4e-52  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0253396  normal  0.609444 
 
 
-
 
NC_008148  Rxyl_1174  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
528 aa  207  5e-52  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1430  binding-protein-dependent transport systems inner membrane component  37.47 
 
 
511 aa  205  1e-51  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000545483 
 
 
-
 
NC_010718  Nther_2889  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
543 aa  176  7e-43  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2723  binding-protein-dependent transport systems inner membrane component  35.6 
 
 
530 aa  175  1.9999999999999998e-42  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.5168 
 
 
-
 
NC_013202  Hmuk_2276  binding-protein-dependent transport systems inner membrane component  28.77 
 
 
541 aa  167  5.9999999999999996e-40  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009523  RoseRS_2293  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
557 aa  154  2.9999999999999998e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2071  binding-protein-dependent transport systems inner membrane component  35.12 
 
 
506 aa  154  2.9999999999999998e-36  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_1924  binding-protein-dependent transport systems inner membrane component  28.83 
 
 
540 aa  151  3e-35  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013440  Hoch_6602  binding-protein-dependent transport systems inner membrane component  31.04 
 
 
530 aa  144  3e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.442605 
 
 
-
 
NC_013158  Huta_1875  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
545 aa  139  8.999999999999999e-32  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_008261  CPF_0441  putative iron ABC transporter, permease protein  22.85 
 
 
533 aa  137  4e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  0.388151  n/a   
 
 
-
 
NC_013173  Dbac_0741  binding-protein-dependent transport systems inner membrane component  26.32 
 
 
550 aa  137  6.0000000000000005e-31  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_1463  ABC transporter related protein  32.64 
 
 
1057 aa  135  1.9999999999999998e-30  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_007498  Pcar_0894  ABC-type transport system, permease component  28.27 
 
 
553 aa  133  9e-30  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000205423  n/a   
 
 
-
 
NC_007614  Nmul_A0731  binding-protein dependent transport system inner membrane protein  26.65 
 
 
567 aa  130  6e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0677887  n/a   
 
 
-
 
NC_007204  Psyc_1546  ABC iron transporter, inner membrane subunit  28.34 
 
 
564 aa  129  1.0000000000000001e-28  Psychrobacter arcticus 273-4  Bacteria  normal  0.424688  normal  0.358419 
 
 
-
 
NC_007969  Pcryo_1727  binding-protein-dependent transport systems inner membrane component  28.54 
 
 
561 aa  129  1.0000000000000001e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.368895 
 
 
-
 
NC_011138  MADE_00163  putative ABC-type transport system, permease component  31.28 
 
 
507 aa  129  2.0000000000000002e-28  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.452019  n/a   
 
 
-
 
NC_012560  Avin_47290  iron ABC transporter, permease protein  28.54 
 
 
538 aa  128  3e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0122  binding-protein-dependent transport systems inner membrane component  26.68 
 
 
559 aa  127  6e-28  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1189  binding-protein-dependent transport systems inner membrane component  29.81 
 
 
549 aa  127  7e-28  Halorhodospira halophila SL1  Bacteria  normal  0.217598  n/a   
 
 
-
 
NC_002978  WD1136  iron compound ABC transporter, permease protein, putative  22.66 
 
 
532 aa  125  2e-27  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2575  binding-protein-dependent transport systems inner membrane component  26.99 
 
 
568 aa  122  1.9999999999999998e-26  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0287363 
 
 
-
 
NC_009253  Dred_1530  binding-protein-dependent transport systems inner membrane component  24.47 
 
 
550 aa  121  3e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.714891  n/a   
 
 
-
 
NC_010501  PputW619_5020  binding-protein-dependent transport systems inner membrane component  29.48 
 
 
556 aa  119  9.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5195  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
540 aa  119  1.9999999999999998e-25  Pseudomonas putida KT2440  Bacteria  normal  0.154251  normal 
 
 
-
 
NC_007492  Pfl01_5429  binding-protein dependent transport system inner membrane protein  29.12 
 
 
555 aa  119  1.9999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0325707 
 
 
-
 
NC_009439  Pmen_0330  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
538 aa  117  3.9999999999999997e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_5102  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
540 aa  117  3.9999999999999997e-25  Pseudomonas putida F1  Bacteria  normal  0.497984  normal 
 
 
-
 
NC_010322  PputGB1_5255  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
540 aa  116  8.999999999999998e-25  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0317  binding-protein-dependent transport systems inner membrane component  27.82 
 
 
570 aa  116  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.931275 
 
 
-
 
NC_008698  Tpen_1555  binding-protein-dependent transport systems inner membrane component  27.42 
 
 
561 aa  115  2.0000000000000002e-24  Thermofilum pendens Hrk 5  Archaea  normal  0.488219  n/a   
 
 
-
 
NC_009719  Plav_0177  binding-protein-dependent transport systems inner membrane component  29.31 
 
 
553 aa  113  9e-24  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.445803 
 
 
-
 
NC_008599  CFF8240_0116  iron ABC transporter, permease protein  23.26 
 
 
518 aa  113  9e-24  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0315  iron ABC transporter, permease protein  29.61 
 
 
538 aa  113  1.0000000000000001e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4446  binding-protein-dependent transport systems inner membrane component  24.95 
 
 
550 aa  111  4.0000000000000004e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0245  binding-protein dependent transport system inner membrane protein  28.71 
 
 
538 aa  109  1e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3753  binding-protein-dependent transport systems inner membrane component  26.85 
 
 
554 aa  107  5e-22  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.104442 
 
 
-
 
NC_009524  PsycPRwf_0870  binding-protein-dependent transport systems inner membrane component  27.25 
 
 
533 aa  107  5e-22  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0400876  hitchhiker  0.00000113394 
 
 
-
 
NC_008740  Maqu_1091  binding-protein-dependent transport systems inner membrane component  24.27 
 
 
562 aa  107  7e-22  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00794358  n/a   
 
 
-
 
NC_007802  Jann_0134  binding-protein-dependent transport systems inner membrane component  28.16 
 
 
558 aa  106  1e-21  Jannaschia sp. CCS1  Bacteria  normal  0.0921183  normal 
 
 
-
 
NC_003912  CJE0167  iron ABC transporter, permease protein  22.8 
 
 
538 aa  105  2e-21  Campylobacter jejuni RM1221  Bacteria  normal  0.471521  n/a   
 
 
-
 
NC_011769  DvMF_1588  binding-protein-dependent transport systems inner membrane component  24.41 
 
 
563 aa  105  2e-21  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007404  Tbd_0989  iron transport system permease protein  27.97 
 
 
529 aa  105  2e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1840  binding-protein-dependent transport systems inner membrane component  25.16 
 
 
561 aa  105  2e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0210  iron ABC transporter, permease protein  22.8 
 
 
538 aa  105  2e-21  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.912172  n/a   
 
 
-
 
NC_009707  JJD26997_0188  iron ABC transporter, permease protein  22.8 
 
 
538 aa  105  2e-21  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5961  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
542 aa  104  4e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  0.727923  n/a   
 
 
-
 
NC_010725  Mpop_0544  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
550 aa  103  5e-21  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2094  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
562 aa  102  2e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_68890  putative iron ABC transporter, permease protein  29.42 
 
 
539 aa  101  4e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4317  ABC spermidine/putrescine transporter, inner membrane subunit  27.56 
 
 
562 aa  100  5e-20  Burkholderia sp. 383  Bacteria  normal  0.946485  normal  0.426161 
 
 
-
 
NC_011901  Tgr7_0454  binding-protein-dependent transport systems inner membrane component  28.16 
 
 
562 aa  100  6e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_010172  Mext_0571  binding-protein-dependent transport systems inner membrane component  28.43 
 
 
550 aa  100  9e-20  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1198  binding-protein dependent transport system inner membrane protein  28.15 
 
 
545 aa  100  9e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007799  ECH_0972  ABC transporter, permease protein  21.8 
 
 
521 aa  99.8  1e-19  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.200041  n/a   
 
 
-
 
NC_011757  Mchl_0580  binding-protein-dependent transport systems inner membrane component  28.43 
 
 
550 aa  99  2e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0169  binding-protein-dependent transport systems inner membrane component  25.41 
 
 
566 aa  99  2e-19  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1797  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
557 aa  97.8  4e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.406299 
 
 
-
 
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