| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0315 |
|---|
| Symbol | |
|---|
| ID | 1181924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 342066 |
|---|
| End bp | 343682 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637391684 |
|---|
| Product | iron ABC transporter, permease protein |
|---|
| Protein accession | NP_790165 |
|---|
| Protein GI | 28867546 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCCCATC CTGTCCAACG CCGCTGGTAC CCACTGGTCT TTGCCATCGC TGCGCTGGTG
CTGTTGCCGC TGAGCGTTTT GCTGCTGTCA TGGGAGACCA TCGACACGCA GATCTGGTCG
CACCTGCTTG AAACCCAGAT GGCGCGCCTG TTGAGCAACA CGCTGATCCT GCTGCTGGGG
GTTGGCGTGG GCGTGACGCT ACTGGGCGTA AGCCTGGCCT GGCTGACCAG CCTGTGTGAG
TTTCCCGGCA GACGCTGGCT GGACTGGGCG CTGATGCTGC CGTTTGCAAT CCCGGCCTAT
GTGCTGGCGT TCGTGTTTGT CGGGTTGCTG GATTTTTCCG GCCCGGTGCA AACCCTGATG
CGCGAATGGT TCGGCGCTGG CCTGCGCTTG CCAAGAGTGC GTTCCACCGG CGGGGTGATC
ATCGTGCTGG TGCTGGTCTT CTATCCCTAC GTTTACCTGC TGGCGCGCAC CGCGTTTCTG
GCGCAGGGCA AGGGGCTGAT GGAAGCAGCC CGCGTGCTGG GCAACTCGCC CTGGCAGGCC
TTCTGGCGCG TGGCGCTGCC GATGGCGCGT CCGGCCATCG GCGCGGGTGT GGCGCTGGCG
TTGATGGAAA CCCTGGCGGA TTTCGGCGCG GTATCGGTGT TCAACTTCGA CACCTTCACT
ACCGCTATCT ACAAGACCTG GTACGGCTTC TTCAGCCTGT CCAGCGCCGC GCAACTGGCC
AGCCTGTTGC TGCTGGCGGT GCTGATCCTG CTGTATGGCG AGCGTCGTGC CCGTGGCGCA
AGCCGGCCGG GCAACGAAAG GCCCCGCGCT ACCGCGCTTT ACACGCTACA CGGCGTCAAG
GCATGGAGCG CCAGCCTGTG GTGCGGGCTG GTGTTTCTCT GCGCCTTCGT CGTACCGGTG
CTGCAATTGA TCGTCTGGGT CTGGCAGCGT GGCCGTTTCG ACCTCGACGA GCGGTACACC
GGTTTGATCC TGCACACTCT CTATCTGGGC GGCATGGCGG CCTTGATCAC CGTCAGCGTC
GCGATGATTC TGGCCTTTGC CCGACGCATG GCACCCACGC CGGCCATTCG CTCTGGCGTC
AGTCTCGCCA ACCTGGGTTA TGCACTACCG GGCTCGGTGC TGGCCGTTTC AATCATGCTG
GCGTTCAGTT ACCTGGACCG GGTGCTGGTC GTCCCGCTGT CGGGCTGGCT GGGCGGCGCG
GGCAAGCCGC TGTTGCTGGG CAGTCTGTCA GCCCTGCTGC TGGCTTACCT GGTGCGTTTC
ATCGCCGTCG CCTTCGGGCC GCTGGAACAC AGCCTGTCGC GCATCCGCCC CTCGTTGCCC
GAAGCCGCAC GCAGTCTGGG GGTCAGTGGA CCGAAGTTGT TTCTCAACGT GTACCTGCCG
CTGCTGATTC CGGGAGCGCT GAGCGCGGCA TTGCTGGTGT TCGTCGATGT CCTCAAAGAG
ATGCCGGCAA CCCTGCTGAT GCGCCCGTTT GGCTGGGATA CGCTGGCCGT GCGCATCTTT
GAAATGACCA GCGAGGGCGA GTGGGCGCGG GCTGCATTGC CAGCTTTGTC TCTGGTGCTT
GTAGGATTAT TGCCTGTCAT TGTGTTGATT CGTCGCTCTG CCCGTCAGAT TGGCTAG
|
|---|
| Protein sequence | MAHPVQRRWY PLVFAIAALV LLPLSVLLLS WETIDTQIWS HLLETQMARL LSNTLILLLG
VGVGVTLLGV SLAWLTSLCE FPGRRWLDWA LMLPFAIPAY VLAFVFVGLL DFSGPVQTLM
REWFGAGLRL PRVRSTGGVI IVLVLVFYPY VYLLARTAFL AQGKGLMEAA RVLGNSPWQA
FWRVALPMAR PAIGAGVALA LMETLADFGA VSVFNFDTFT TAIYKTWYGF FSLSSAAQLA
SLLLLAVLIL LYGERRARGA SRPGNERPRA TALYTLHGVK AWSASLWCGL VFLCAFVVPV
LQLIVWVWQR GRFDLDERYT GLILHTLYLG GMAALITVSV AMILAFARRM APTPAIRSGV
SLANLGYALP GSVLAVSIML AFSYLDRVLV VPLSGWLGGA GKPLLLGSLS ALLLAYLVRF
IAVAFGPLEH SLSRIRPSLP EAARSLGVSG PKLFLNVYLP LLIPGALSAA LLVFVDVLKE
MPATLLMRPF GWDTLAVRIF EMTSEGEWAR AALPALSLVL VGLLPVIVLI RRSARQIG
|
|---|
| |