More than 300 homologs were found in PanDaTox collection
for query gene Lcho_4097 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_4097  two component LuxR family transcriptional regulator  100 
 
 
239 aa  481  1e-135  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000208001 
 
 
-
 
NC_012791  Vapar_4377  two component transcriptional regulator, LuxR family  38.53 
 
 
237 aa  107  2e-22  Variovorax paradoxus S110  Bacteria  normal  0.237342  n/a   
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  33.01 
 
 
211 aa  90.1  2e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_012792  Vapar_6121  two component transcriptional regulator, LuxR family  36.7 
 
 
212 aa  90.9  2e-17  Variovorax paradoxus S110  Bacteria  normal  0.808445  n/a   
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  33.01 
 
 
224 aa  89.7  4e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  31.37 
 
 
209 aa  89.4  5e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  28.3 
 
 
216 aa  89  7e-17  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  30.05 
 
 
211 aa  87.8  1e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  29.77 
 
 
221 aa  88.2  1e-16  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  35.65 
 
 
215 aa  87.4  2e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  31.16 
 
 
242 aa  87.4  2e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  29.82 
 
 
224 aa  87.4  2e-16  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  31.16 
 
 
242 aa  86.3  4e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  28.99 
 
 
211 aa  86.3  4e-16  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.71 
 
 
213 aa  85.5  6e-16  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  31.55 
 
 
215 aa  85.1  8e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  34.11 
 
 
219 aa  85.1  8e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0500  two component transcriptional regulator, LuxR family  30.99 
 
 
226 aa  85.1  9e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4749  two component transcriptional regulator, LuxR family  30.7 
 
 
223 aa  85.1  9e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  31.9 
 
 
227 aa  84.7  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  31.37 
 
 
212 aa  84.7  0.000000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  31.4 
 
 
232 aa  84.7  0.000000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  27.94 
 
 
216 aa  84.7  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  31.3 
 
 
238 aa  83.6  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  29.52 
 
 
210 aa  84.3  0.000000000000002  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  33.33 
 
 
230 aa  83.2  0.000000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  30.77 
 
 
210 aa  83.6  0.000000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  34.13 
 
 
213 aa  83.6  0.000000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  29.05 
 
 
210 aa  83.2  0.000000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  31.07 
 
 
213 aa  82.8  0.000000000000004  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_009439  Pmen_4183  two component LuxR family transcriptional regulator  30.59 
 
 
220 aa  82.8  0.000000000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  29.17 
 
 
236 aa  82.8  0.000000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  30.77 
 
 
213 aa  82.8  0.000000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  33.66 
 
 
204 aa  83.2  0.000000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5915  two component transcriptional regulator, LuxR family  28.78 
 
 
207 aa  82.8  0.000000000000005  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00974735  normal 
 
 
-
 
NC_011666  Msil_3144  two component transcriptional regulator, LuxR family  34.29 
 
 
232 aa  82.8  0.000000000000005  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  29.52 
 
 
210 aa  82.4  0.000000000000005  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  31.1 
 
 
221 aa  82  0.000000000000007  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  28.77 
 
 
218 aa  82  0.000000000000007  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  29.52 
 
 
210 aa  82  0.000000000000008  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  29.52 
 
 
210 aa  82  0.000000000000008  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  29.52 
 
 
210 aa  82  0.000000000000008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  29.52 
 
 
210 aa  82  0.000000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  29.52 
 
 
210 aa  82  0.000000000000008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  29.52 
 
 
210 aa  82  0.000000000000008  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  29.95 
 
 
252 aa  82  0.000000000000008  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  33.02 
 
 
223 aa  81.6  0.000000000000009  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  31.07 
 
 
218 aa  81.6  0.000000000000009  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  31.07 
 
 
218 aa  81.6  0.000000000000009  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  32.54 
 
 
214 aa  81.6  0.000000000000009  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.241819 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  31.16 
 
 
219 aa  81.6  0.00000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  33.99 
 
 
210 aa  80.9  0.00000000000002  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal 
 
 
-
 
NC_006274  BCZK1321  response regulator  29.52 
 
 
210 aa  80.5  0.00000000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  30.24 
 
 
221 aa  80.5  0.00000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  31.25 
 
 
217 aa  80.9  0.00000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  30.84 
 
 
210 aa  80.5  0.00000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_010571  Oter_0647  two component LuxR family transcriptional regulator  29.52 
 
 
225 aa  80.9  0.00000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  30.66 
 
 
220 aa  80.5  0.00000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  28.43 
 
 
209 aa  80.5  0.00000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  30.29 
 
 
213 aa  80.1  0.00000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  30.05 
 
 
225 aa  80.1  0.00000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  30.1 
 
 
1648 aa  80.1  0.00000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  30.05 
 
 
210 aa  79.7  0.00000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  28.92 
 
 
231 aa  79.7  0.00000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  30.95 
 
 
224 aa  79.7  0.00000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  30.77 
 
 
217 aa  79.7  0.00000000000004  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_008025  Dgeo_1708  two component LuxR family transcriptional regulator  33.98 
 
 
221 aa  79.7  0.00000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.685529 
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  29.41 
 
 
223 aa  79.3  0.00000000000005  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal 
 
 
-
 
NC_010510  Mrad2831_5893  two component LuxR family transcriptional regulator  31.86 
 
 
219 aa  79.3  0.00000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.125381 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  27.7 
 
 
213 aa  79.3  0.00000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  28.23 
 
 
213 aa  79.3  0.00000000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  29.52 
 
 
217 aa  79  0.00000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  33.49 
 
 
226 aa  79  0.00000000000006  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  31.25 
 
 
235 aa  78.6  0.00000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  29.27 
 
 
212 aa  79  0.00000000000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  31.02 
 
 
224 aa  78.6  0.00000000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  31.02 
 
 
212 aa  78.6  0.00000000000009  Opitutus terrae PB90-1  Bacteria  normal  normal  0.996792 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  29.95 
 
 
217 aa  78.6  0.00000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013947  Snas_5550  two component transcriptional regulator, LuxR family  30.43 
 
 
213 aa  78.2  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159917  normal  0.0692801 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  29.41 
 
 
221 aa  77.8  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  30.37 
 
 
229 aa  77.8  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1909  response regulator receiver protein  32.23 
 
 
220 aa  78.2  0.0000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.631594  n/a   
 
 
-
 
NC_009921  Franean1_1435  two component LuxR family transcriptional regulator  32.87 
 
 
218 aa  78.2  0.0000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2603  two component LuxR family transcriptional regulator  30.47 
 
 
226 aa  77  0.0000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0876088  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  28.64 
 
 
237 aa  77.4  0.0000000000002  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_007778  RPB_3065  two component LuxR family transcriptional regulator  30.05 
 
 
217 aa  77.4  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  29.13 
 
 
218 aa  77.4  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  32.13 
 
 
228 aa  77.4  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  28.97 
 
 
214 aa  77.4  0.0000000000002  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_013441  Gbro_4528  response regulator receiver  29.17 
 
 
213 aa  77  0.0000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  32.54 
 
 
216 aa  77.8  0.0000000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  30.69 
 
 
218 aa  77  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  30.81 
 
 
212 aa  77  0.0000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.265772 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  32.11 
 
 
224 aa  77  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3957  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  77  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  28.37 
 
 
212 aa  76.6  0.0000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1240  two component LuxR family transcriptional regulator  25.11 
 
 
207 aa  76.6  0.0000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  31.92 
 
 
217 aa  76.6  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  29.41 
 
 
239 aa  76.6  0.0000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  30.33 
 
 
216 aa  76.6  0.0000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
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