| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0647 |
|---|
| Symbol | |
|---|
| ID | 6208299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 792881 |
|---|
| End bp | 793558 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641690270 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001817537 |
|---|
| Protein GI | 182412471 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAT CCGCCCCCAC GATTCGCGTG CTGGTCGTCG ACGACAGCGC GCTGGTGCGC
ATGGGTTTGC GGTCCGTGCT GGGCACCCAC GGGGCCGCCG CGCGAATCGT GGTGGCGGGC
GAGGCCGATT CGGTCGCATC CGCCGTGAGC GAAACCAAAC GGCTTAAGCC TGACGTCGTG
TTGCTCGACA TCCGGCTCCC GGATGGTTCC GGGCTGCACG CCTGCCGGGA AATCAAACGC
ATGGACGCGT CGACTCGGGT GTTGATCCTC ACCTCGGTGG CCACCGACGA GTTGATCCAG
GAAGCCGTGA TGGCCGGCGC CCAAGGGTAT TTGATGAAGG AGATCGATCC GGATGGGCTC
ACGCGGGCGA TCGTCGATGC TTTCGCGGGC AAATCCGTGC TGACCCCGGA AATCACCGCG
CGCGTCCTGC AGTTGTTGCG TGAAGGTCCG CCGGCCGCCG GCGACAGCCT GGCGGTGCTC
TCCGCGCAAG AGCGCCGCGT CCTGGCACTT GTCGCCGATG GGCTCACCAA CAAGGAAGTC
GCTGAAAAAC TGCGGTTGAG CGACAACACG GTGAAGAACT ATCTCGTGAG CGTGTTTGAG
AAACTGCAGG TGAAGCGGCG CTCGCAGGCC GCCGCGGTCT ACGTTCAAGC GTCCCGCCCG
ACTCCGCCGC AGGCCTGA
|
|---|
| Protein sequence | MSASAPTIRV LVVDDSALVR MGLRSVLGTH GAAARIVVAG EADSVASAVS ETKRLKPDVV
LLDIRLPDGS GLHACREIKR MDASTRVLIL TSVATDELIQ EAVMAGAQGY LMKEIDPDGL
TRAIVDAFAG KSVLTPEITA RVLQLLREGP PAAGDSLAVL SAQERRVLAL VADGLTNKEV
AEKLRLSDNT VKNYLVSVFE KLQVKRRSQA AAVYVQASRP TPPQA
|
|---|
| |