More than 300 homologs were found in PanDaTox collection
for query gene Gbro_2339 on replicon NC_013441
Organism: Gordonia bronchialis DSM 43247



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  100 
 
 
378 aa  768    Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  77.51 
 
 
378 aa  583  1.0000000000000001e-165  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  76.69 
 
 
376 aa  568  1e-161  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  73.53 
 
 
376 aa  559  1e-158  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  75.14 
 
 
387 aa  552  1e-156  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  73.51 
 
 
387 aa  553  1e-156  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  73.51 
 
 
387 aa  553  1e-156  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  73.51 
 
 
387 aa  553  1e-156  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  69.89 
 
 
370 aa  522  1e-147  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  67.39 
 
 
378 aa  514  1e-144  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  61.94 
 
 
404 aa  465  9.999999999999999e-131  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  62.67 
 
 
392 aa  463  1e-129  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  62.5 
 
 
428 aa  459  9.999999999999999e-129  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  63.1 
 
 
420 aa  460  9.999999999999999e-129  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  63.56 
 
 
397 aa  458  9.999999999999999e-129  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  62.04 
 
 
420 aa  457  1e-127  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  62.33 
 
 
395 aa  455  1e-127  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  63.22 
 
 
400 aa  452  1.0000000000000001e-126  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  62.13 
 
 
372 aa  449  1e-125  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  61.44 
 
 
386 aa  447  1.0000000000000001e-124  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  57.25 
 
 
407 aa  444  1e-123  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  61.33 
 
 
388 aa  442  1e-123  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  59.95 
 
 
386 aa  441  9.999999999999999e-123  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  59.52 
 
 
397 aa  440  9.999999999999999e-123  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  59.95 
 
 
378 aa  439  9.999999999999999e-123  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  60.62 
 
 
394 aa  432  1e-120  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  58.27 
 
 
414 aa  433  1e-120  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  60.92 
 
 
416 aa  430  1e-119  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  59.27 
 
 
423 aa  431  1e-119  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  61.39 
 
 
377 aa  426  1e-118  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  56.62 
 
 
403 aa  422  1e-117  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  58.12 
 
 
405 aa  424  1e-117  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  57.47 
 
 
413 aa  418  1e-116  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  54.21 
 
 
412 aa  417  9.999999999999999e-116  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  58.06 
 
 
397 aa  412  1e-114  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  60.52 
 
 
405 aa  411  1e-113  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  57.48 
 
 
402 aa  405  1.0000000000000001e-112  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  54.39 
 
 
421 aa  401  9.999999999999999e-111  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  50.13 
 
 
386 aa  344  2e-93  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  49.35 
 
 
386 aa  335  7e-91  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  49.17 
 
 
359 aa  328  1.0000000000000001e-88  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.03 
 
 
376 aa  328  1.0000000000000001e-88  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  48.92 
 
 
367 aa  326  5e-88  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  48.31 
 
 
372 aa  325  7e-88  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  48.53 
 
 
369 aa  325  7e-88  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  47.64 
 
 
393 aa  323  2e-87  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  48.12 
 
 
367 aa  321  9.999999999999999e-87  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  45.55 
 
 
385 aa  320  3e-86  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  45.69 
 
 
392 aa  319  3.9999999999999996e-86  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  45.69 
 
 
392 aa  319  3.9999999999999996e-86  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  48.81 
 
 
379 aa  319  6e-86  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  46.23 
 
 
381 aa  318  7.999999999999999e-86  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  45.48 
 
 
387 aa  318  1e-85  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  46.29 
 
 
392 aa  317  2e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  47.37 
 
 
383 aa  316  4e-85  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  46.99 
 
 
358 aa  316  5e-85  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  45.38 
 
 
393 aa  315  6e-85  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  46.02 
 
 
381 aa  315  9.999999999999999e-85  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  46.02 
 
 
381 aa  314  9.999999999999999e-85  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  46.02 
 
 
381 aa  314  9.999999999999999e-85  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  47.54 
 
 
359 aa  315  9.999999999999999e-85  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  46.02 
 
 
381 aa  314  9.999999999999999e-85  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  47.87 
 
 
391 aa  314  9.999999999999999e-85  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  46.02 
 
 
381 aa  314  9.999999999999999e-85  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  45.29 
 
 
381 aa  315  9.999999999999999e-85  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  46.35 
 
 
374 aa  314  1.9999999999999998e-84  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  46.21 
 
 
377 aa  314  1.9999999999999998e-84  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  45.62 
 
 
390 aa  313  2.9999999999999996e-84  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  45.76 
 
 
381 aa  313  3.9999999999999997e-84  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  45.43 
 
 
378 aa  313  3.9999999999999997e-84  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  45.76 
 
 
381 aa  313  3.9999999999999997e-84  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  44.39 
 
 
396 aa  313  3.9999999999999997e-84  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_007335  PMN2A_0259  carbamoyl phosphate synthase small subunit  43.75 
 
 
384 aa  312  4.999999999999999e-84  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  45.76 
 
 
381 aa  312  4.999999999999999e-84  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  43.75 
 
 
384 aa  312  5.999999999999999e-84  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  46.63 
 
 
373 aa  311  7.999999999999999e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  45.43 
 
 
378 aa  311  9e-84  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  46.54 
 
 
369 aa  311  1e-83  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  45.29 
 
 
386 aa  311  1e-83  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  46.09 
 
 
369 aa  311  1e-83  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  46.37 
 
 
373 aa  310  2e-83  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  46.27 
 
 
384 aa  310  2e-83  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  46.09 
 
 
381 aa  311  2e-83  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  45.17 
 
 
378 aa  310  2e-83  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  45.95 
 
 
384 aa  311  2e-83  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  46.84 
 
 
378 aa  310  2.9999999999999997e-83  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  45.29 
 
 
385 aa  310  2.9999999999999997e-83  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  45.69 
 
 
374 aa  310  2.9999999999999997e-83  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  47.34 
 
 
388 aa  309  4e-83  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  43.83 
 
 
379 aa  310  4e-83  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  45.9 
 
 
384 aa  309  4e-83  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  45.85 
 
 
388 aa  309  5e-83  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  45.23 
 
 
394 aa  309  5e-83  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  49.08 
 
 
379 aa  309  5.9999999999999995e-83  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  45.1 
 
 
390 aa  309  5.9999999999999995e-83  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  46.42 
 
 
399 aa  309  5.9999999999999995e-83  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  46.51 
 
 
385 aa  308  6.999999999999999e-83  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  44.85 
 
 
373 aa  308  8e-83  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  45.22 
 
 
386 aa  308  9e-83  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  45.71 
 
 
383 aa  308  9e-83  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
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