More than 300 homologs were found in PanDaTox collection
for query gene Cpin_5476 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_5476  two component transcriptional regulator, LuxR family  100 
 
 
219 aa  447  1e-125  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.21854 
 
 
-
 
NC_013037  Dfer_2963  two component transcriptional regulator, LuxR family  41.82 
 
 
219 aa  193  1e-48  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5845  two component transcriptional regulator, LuxR family  42.73 
 
 
219 aa  189  2.9999999999999997e-47  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.715181 
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  42.92 
 
 
222 aa  182  3e-45  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal 
 
 
-
 
NC_009441  Fjoh_0036  two component LuxR family transcriptional regulator  43.32 
 
 
221 aa  180  1e-44  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0464925  n/a   
 
 
-
 
NC_013132  Cpin_0010  two component transcriptional regulator, LuxR family  35.81 
 
 
219 aa  155  5.0000000000000005e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  34.56 
 
 
222 aa  143  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  37.16 
 
 
213 aa  142  4e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  34.42 
 
 
214 aa  140  1.9999999999999998e-32  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  33.49 
 
 
216 aa  139  1.9999999999999998e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3409  two component transcriptional regulator, LuxR family  35.91 
 
 
221 aa  139  3.9999999999999997e-32  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000306896  hitchhiker  0.000114505 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  32.42 
 
 
224 aa  138  6e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  35.94 
 
 
224 aa  138  7e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  35.05 
 
 
215 aa  138  7e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  34.58 
 
 
215 aa  138  7e-32  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  33.63 
 
 
228 aa  138  7e-32  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_009656  PSPA7_2613  response regulator GacA  34.88 
 
 
214 aa  138  7.999999999999999e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  0.466832  n/a   
 
 
-
 
NC_008463  PA14_30650  response regulator GacA  34.88 
 
 
214 aa  138  7.999999999999999e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00700013 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  34.58 
 
 
215 aa  137  8.999999999999999e-32  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  35.05 
 
 
215 aa  137  8.999999999999999e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  33.64 
 
 
216 aa  137  1e-31  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  34.43 
 
 
224 aa  137  1e-31  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  34.58 
 
 
215 aa  136  2e-31  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  34.58 
 
 
215 aa  136  2e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  34.58 
 
 
215 aa  136  2e-31  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  34.58 
 
 
215 aa  136  2e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  34.58 
 
 
215 aa  136  2e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  34.11 
 
 
215 aa  136  3.0000000000000003e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6821  two component transcriptional regulator, LuxR family  31.96 
 
 
225 aa  136  3.0000000000000003e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.121688  normal  0.121136 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  38.14 
 
 
210 aa  136  3.0000000000000003e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  34.56 
 
 
220 aa  135  4e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  31.34 
 
 
225 aa  135  5e-31  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  35.41 
 
 
219 aa  135  6.0000000000000005e-31  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  32.71 
 
 
219 aa  134  8e-31  Pseudomonas putida W619  Bacteria  normal  0.118638  normal 
 
 
-
 
NC_013132  Cpin_1556  two component transcriptional regulator, LuxR family  34.25 
 
 
222 aa  134  9e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  35.19 
 
 
228 aa  134  9.999999999999999e-31  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  34.26 
 
 
225 aa  134  9.999999999999999e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  32.87 
 
 
215 aa  134  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  32.26 
 
 
221 aa  133  1.9999999999999998e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  32.87 
 
 
220 aa  132  3e-30  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  31.02 
 
 
214 aa  133  3e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  33.18 
 
 
225 aa  132  3.9999999999999996e-30  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009439  Pmen_2375  two component LuxR family transcriptional regulator  33.18 
 
 
214 aa  132  3.9999999999999996e-30  Pseudomonas mendocina ymp  Bacteria  normal  0.405291  normal  0.0506876 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  35.87 
 
 
226 aa  132  5e-30  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_010501  PputW619_3375  two component LuxR family transcriptional regulator  32.56 
 
 
212 aa  132  5e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2973  two component LuxR family transcriptional regulator  33.33 
 
 
216 aa  131  6e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  31.16 
 
 
217 aa  131  6.999999999999999e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  31.34 
 
 
222 aa  131  6.999999999999999e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2126  LuxR family DNA-binding response regulator  31.78 
 
 
219 aa  131  9e-30  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_008789  Hhal_0023  two component LuxR family transcriptional regulator  33.33 
 
 
216 aa  131  9e-30  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.41 
 
 
222 aa  130  1.0000000000000001e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_002947  PP_4099  DNA-binding response regulator GacA  32.09 
 
 
212 aa  130  1.0000000000000001e-29  Pseudomonas putida KT2440  Bacteria  normal  0.427607  normal  0.0594882 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  34.42 
 
 
210 aa  130  1.0000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_21850  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.41 
 
 
222 aa  130  1.0000000000000001e-29  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118113  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  32.14 
 
 
233 aa  131  1.0000000000000001e-29  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  32.86 
 
 
214 aa  130  1.0000000000000001e-29  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_009512  Pput_1765  two component LuxR family transcriptional regulator  32.09 
 
 
212 aa  130  1.0000000000000001e-29  Pseudomonas putida F1  Bacteria  normal  0.456405  hitchhiker  0.00257365 
 
 
-
 
NC_006274  BCZK1321  response regulator  34.6 
 
 
210 aa  129  2.0000000000000002e-29  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  33.33 
 
 
217 aa  130  2.0000000000000002e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  31.19 
 
 
219 aa  129  2.0000000000000002e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_013132  Cpin_4294  two component transcriptional regulator, LuxR family  33.64 
 
 
218 aa  129  2.0000000000000002e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.81327  normal  0.0351026 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  30.41 
 
 
226 aa  130  2.0000000000000002e-29  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_010001  Cphy_0851  two component LuxR family transcriptional regulator  31.16 
 
 
216 aa  130  2.0000000000000002e-29  Clostridium phytofermentans ISDg  Bacteria  normal  0.0778308  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  33.49 
 
 
213 aa  130  2.0000000000000002e-29  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  30.88 
 
 
221 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  33.33 
 
 
217 aa  130  2.0000000000000002e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_014210  Ndas_4009  two component transcriptional regulator, LuxR family  33.03 
 
 
231 aa  129  3e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0669057  normal  0.324745 
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  34.39 
 
 
218 aa  129  3e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_013739  Cwoe_5387  two component transcriptional regulator, LuxR family  32.26 
 
 
215 aa  129  3e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  34.6 
 
 
210 aa  129  3e-29  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  33.64 
 
 
211 aa  129  4.0000000000000003e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_004578  PSPTO_3024  DNA-binding response regulator GacA  32.72 
 
 
214 aa  129  4.0000000000000003e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.26082  n/a   
 
 
-
 
NC_009441  Fjoh_4664  two component LuxR family transcriptional regulator  33.18 
 
 
219 aa  129  4.0000000000000003e-29  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  30.45 
 
 
224 aa  129  5.0000000000000004e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_007005  Psyr_2897  LuxR response regulator receiver  32.26 
 
 
222 aa  128  7.000000000000001e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.017691  normal  0.317002 
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  30.37 
 
 
219 aa  128  8.000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  normal  0.869411 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  35.45 
 
 
227 aa  128  8.000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  31.63 
 
 
210 aa  127  1.0000000000000001e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  31.36 
 
 
219 aa  127  1.0000000000000001e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  31.31 
 
 
219 aa  127  1.0000000000000001e-28  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  36.45 
 
 
211 aa  127  1.0000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  34.12 
 
 
210 aa  127  1.0000000000000001e-28  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  30.52 
 
 
206 aa  127  1.0000000000000001e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  31.65 
 
 
218 aa  127  2.0000000000000002e-28  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  32.72 
 
 
222 aa  126  2.0000000000000002e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  33.33 
 
 
242 aa  127  2.0000000000000002e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  31.65 
 
 
218 aa  127  2.0000000000000002e-28  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  33.8 
 
 
221 aa  126  2.0000000000000002e-28  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_007963  Csal_2132  two component LuxR family transcriptional regulator  30.7 
 
 
214 aa  127  2.0000000000000002e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0449794  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  32.73 
 
 
208 aa  126  2.0000000000000002e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_012918  GM21_1971  two component transcriptional regulator, LuxR family  32.56 
 
 
216 aa  127  2.0000000000000002e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  32.09 
 
 
224 aa  127  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_009455  DehaBAV1_0409  two component LuxR family transcriptional regulator  32.86 
 
 
232 aa  126  2.0000000000000002e-28  Dehalococcoides sp. BAV1  Bacteria  normal  0.135269  n/a   
 
 
-
 
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