More than 300 homologs were found in PanDaTox collection
for query gene Acid345_4655 on replicon NC_008009
Organism: Candidatus Koribacter versatilis Ellin345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008009  Acid345_4655  response regulator receiver protein  100 
 
 
125 aa  261  3e-69  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.230035  normal 
 
 
-
 
NC_008009  Acid345_2167  response regulator receiver protein  43.55 
 
 
204 aa  110  7.000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.965673 
 
 
-
 
NC_008009  Acid345_2479  response regulator receiver protein  44.74 
 
 
204 aa  103  1e-21  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.303056 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  43.69 
 
 
331 aa  85.5  2e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  38.94 
 
 
476 aa  83.6  8e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  42.59 
 
 
382 aa  82  0.000000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  41.12 
 
 
1127 aa  81.3  0.000000000000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2712  response regulator receiver sensor signal transduction histidine kinase  36.11 
 
 
414 aa  80.5  0.000000000000006  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  35.78 
 
 
457 aa  80.5  0.000000000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4975  PAS/PAC sensor hybrid histidine kinase  37.19 
 
 
660 aa  79.7  0.00000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  34.4 
 
 
235 aa  79.7  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  34.4 
 
 
235 aa  79.7  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  34.4 
 
 
235 aa  79.7  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  35.78 
 
 
457 aa  79  0.00000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  39.25 
 
 
491 aa  79  0.00000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_011661  Dtur_0252  putative PAS/PAC sensor protein  34.91 
 
 
306 aa  79.3  0.00000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  36.04 
 
 
318 aa  78.2  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_009718  Fnod_0915  CheA signal transduction histidine kinase  38.53 
 
 
584 aa  78.6  0.00000000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  33.6 
 
 
235 aa  78.6  0.00000000000003  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_008009  Acid345_1812  PAS/PAC sensor hybrid histidine kinase  32.79 
 
 
553 aa  78.2  0.00000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0506  adenylate/guanylate cyclase  38.02 
 
 
380 aa  78.2  0.00000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.149903  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  34.4 
 
 
235 aa  78.6  0.00000000000003  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  34.78 
 
 
394 aa  77.8  0.00000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  36.52 
 
 
376 aa  77.8  0.00000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_009523  RoseRS_0702  response regulator receiver modulated metal dependent phosphohydrolase  40 
 
 
331 aa  77.4  0.00000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.140022  normal 
 
 
-
 
NC_012918  GM21_0268  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
456 aa  77.4  0.00000000000006  Geobacter sp. M21  Bacteria  n/a    normal  0.0540037 
 
 
-
 
NC_011146  Gbem_0283  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
456 aa  77.4  0.00000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2411  PAS/PAC sensor hybrid histidine kinase  38.32 
 
 
497 aa  77.4  0.00000000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2194  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
452 aa  77  0.00000000000008  Geobacter sp. M21  Bacteria  n/a    normal  0.514859 
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  39.45 
 
 
456 aa  76.6  0.00000000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  34.91 
 
 
395 aa  77  0.00000000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013440  Hoch_3251  response regulator receiver sensor signal transduction histidine kinase  34.43 
 
 
418 aa  76.6  0.00000000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35487  normal  0.0265543 
 
 
-
 
NC_011146  Gbem_1708  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.37 
 
 
869 aa  76.3  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1777  metal dependent phosphohydrolase, HD region with response regulator receiver modulation  36.36 
 
 
414 aa  76.6  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0719  multi-sensor signal transduction histidine kinase  38.18 
 
 
531 aa  76.6  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1105  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
475 aa  76.3  0.0000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.926771  normal  0.835973 
 
 
-
 
NC_007516  Syncc9605_0109  two component transcriptional regulator  43.52 
 
 
253 aa  76.3  0.0000000000001  Synechococcus sp. CC9605  Bacteria  normal  0.427788  normal  0.468211 
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
501 aa  76.3  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  36.51 
 
 
237 aa  76.6  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1897  two component transcriptional regulator, winged helix family  33.06 
 
 
229 aa  76.3  0.0000000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1055  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
481 aa  76.3  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.874499  n/a   
 
 
-
 
NC_011831  Cagg_1858  two component transcriptional regulator, winged helix family  35.83 
 
 
227 aa  76.3  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
481 aa  76.3  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  36.36 
 
 
231 aa  76.3  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_011729  PCC7424_1422  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
361 aa  76.6  0.0000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  40.78 
 
 
328 aa  76.6  0.0000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0479  response regulator receiver modulated serine phosphatase  38.68 
 
 
529 aa  76.3  0.0000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.53029  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  38.39 
 
 
367 aa  75.9  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  39.09 
 
 
312 aa  75.5  0.0000000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  35.51 
 
 
465 aa  75.5  0.0000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_009507  Swit_5356  response regulator receiver sensor signal transduction histidine kinase  40.17 
 
 
377 aa  75.5  0.0000000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.940445 
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  35.85 
 
 
373 aa  75.5  0.0000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009012  Cthe_1916  two component transcriptional regulator  34.68 
 
 
228 aa  75.5  0.0000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.400732  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  36.11 
 
 
337 aa  75.5  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  42.42 
 
 
233 aa  75.9  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  38 
 
 
394 aa  75.5  0.0000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  39.45 
 
 
424 aa  75.9  0.0000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_009943  Dole_1090  response regulator receiver protein  44.94 
 
 
846 aa  75.5  0.0000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.874134  n/a   
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  34.21 
 
 
372 aa  74.7  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_1196  two component transcriptional regulator  40.83 
 
 
246 aa  75.1  0.0000000000003  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2563  periplasmic sensor hybrid histidine kinase  36.11 
 
 
935 aa  75.1  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.851477 
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  34.96 
 
 
458 aa  75.1  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  37.14 
 
 
619 aa  75.1  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_007912  Sde_0522  response regulator receiver domain-containing protein  35.45 
 
 
120 aa  75.1  0.0000000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  39.17 
 
 
457 aa  75.1  0.0000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  32.5 
 
 
170 aa  75.1  0.0000000000003  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_009253  Dred_2145  multi-sensor hybrid histidine kinase  33.94 
 
 
1271 aa  75.5  0.0000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  0.152151  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  36.97 
 
 
229 aa  75.1  0.0000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  34.88 
 
 
310 aa  75.1  0.0000000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  36.29 
 
 
309 aa  74.7  0.0000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  34.86 
 
 
455 aa  74.7  0.0000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_009976  P9211_17451  two-component response regulator  37.78 
 
 
269 aa  74.7  0.0000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  33.05 
 
 
338 aa  74.7  0.0000000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01717  putative response regulator  42.02 
 
 
568 aa  74.7  0.0000000000004  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_0153  two component transcriptional regulator  41.67 
 
 
253 aa  74.7  0.0000000000004  Synechococcus sp. CC9902  Bacteria  normal  0.711737  n/a   
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  38.66 
 
 
457 aa  74.7  0.0000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  39.45 
 
 
303 aa  74.7  0.0000000000004  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_008819  NATL1_20711  two-component response regulator  40.83 
 
 
246 aa  74.7  0.0000000000004  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  38.79 
 
 
236 aa  74.3  0.0000000000005  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  34.91 
 
 
705 aa  74.3  0.0000000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  36.11 
 
 
466 aa  74.3  0.0000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_3616  response regulator receiver Signal transduction histidine kinase  39.45 
 
 
393 aa  74.3  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159723  normal  0.789101 
 
 
-
 
NC_009457  VC0395_A0150  sensory box sensor histidine kinase/response regulator  34.45 
 
 
1177 aa  74.3  0.0000000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3778  response regulator receiver domain-containing protein  36.11 
 
 
124 aa  74.3  0.0000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4868  response regulator receiver protein  38.32 
 
 
143 aa  74.3  0.0000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2025  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
452 aa  74.3  0.0000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1538  phosphate regulon transcriptional regulatory protein  30.28 
 
 
228 aa  74.3  0.0000000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.280381 
 
 
-
 
NC_007912  Sde_3633  response regulator receiver domain-containing protein  34.23 
 
 
120 aa  74.3  0.0000000000006  Saccharophagus degradans 2-40  Bacteria  normal  0.480345  normal 
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  37.86 
 
 
312 aa  74.3  0.0000000000006  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  36.13 
 
 
229 aa  74.3  0.0000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  34.15 
 
 
458 aa  73.9  0.0000000000007  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  36 
 
 
394 aa  73.6  0.0000000000008  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  41.44 
 
 
457 aa  73.9  0.0000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  38.52 
 
 
236 aa  73.6  0.0000000000008  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
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