More than 300 homologs were found in PanDaTox collection
for query gene Ndas_3959 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_3959  cell envelope-related transcriptional attenuator  100 
 
 
463 aa  931    Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  73.44 
 
 
404 aa  438  1e-121  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  51.3 
 
 
336 aa  311  1e-83  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  49.03 
 
 
320 aa  302  7.000000000000001e-81  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  51.15 
 
 
326 aa  298  1e-79  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  46.3 
 
 
409 aa  283  6.000000000000001e-75  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  47.39 
 
 
306 aa  278  2e-73  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  49.2 
 
 
424 aa  275  1.0000000000000001e-72  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  46.69 
 
 
311 aa  263  3e-69  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  46.69 
 
 
311 aa  263  4.999999999999999e-69  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  46.69 
 
 
311 aa  263  4.999999999999999e-69  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  46.6 
 
 
307 aa  260  3e-68  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  43.04 
 
 
307 aa  255  1.0000000000000001e-66  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  43.03 
 
 
466 aa  253  7e-66  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  41.74 
 
 
394 aa  241  2e-62  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  46.45 
 
 
407 aa  232  9e-60  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  36.7 
 
 
434 aa  206  9e-52  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  34.89 
 
 
393 aa  202  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  35.92 
 
 
497 aa  201  3e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1395  cell envelope-related transcriptional attenuator  41.02 
 
 
404 aa  197  4.0000000000000005e-49  Nocardioides sp. JS614  Bacteria  normal  0.330473  n/a   
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  34.88 
 
 
509 aa  182  9.000000000000001e-45  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  34.83 
 
 
505 aa  181  2.9999999999999997e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  37.34 
 
 
434 aa  180  4e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  36.18 
 
 
504 aa  173  5.999999999999999e-42  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_014151  Cfla_2384  cell envelope-related transcriptional attenuator  38.08 
 
 
303 aa  170  5e-41  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.174416  hitchhiker  0.00797054 
 
 
-
 
NC_012669  Bcav_1165  cell envelope-related protein transcriptional attenuator  37.93 
 
 
363 aa  169  1e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  33.73 
 
 
489 aa  168  2e-40  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  36.76 
 
 
296 aa  166  6.9999999999999995e-40  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2595  cell envelope-related transcriptional attenuator  38.22 
 
 
313 aa  165  2.0000000000000002e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  31.54 
 
 
549 aa  151  3e-35  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  34.45 
 
 
390 aa  150  6e-35  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  32.83 
 
 
567 aa  146  8.000000000000001e-34  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  32.73 
 
 
732 aa  144  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  34.07 
 
 
521 aa  143  8e-33  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  33.13 
 
 
410 aa  142  9.999999999999999e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0588  putative transcriptional regulator  32.22 
 
 
432 aa  139  8.999999999999999e-32  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.952975 
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  32.64 
 
 
491 aa  139  1e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  31.47 
 
 
522 aa  137  5e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  33.96 
 
 
676 aa  135  1.9999999999999998e-30  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  31.37 
 
 
486 aa  132  9e-30  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  30.17 
 
 
625 aa  132  1.0000000000000001e-29  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  29.82 
 
 
573 aa  131  3e-29  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  32.01 
 
 
512 aa  130  6e-29  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_009565  TBFG_13296  CPSA-related protein  34.83 
 
 
497 aa  129  1.0000000000000001e-28  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000000747689  normal 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  32.8 
 
 
545 aa  128  2.0000000000000002e-28  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  32.08 
 
 
478 aa  127  4.0000000000000003e-28  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  29.66 
 
 
584 aa  127  5e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  30 
 
 
468 aa  127  5e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  29.63 
 
 
516 aa  126  8.000000000000001e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  33.89 
 
 
490 aa  126  8.000000000000001e-28  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  33.89 
 
 
490 aa  126  8.000000000000001e-28  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  32.34 
 
 
538 aa  126  9e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  33.89 
 
 
490 aa  126  9e-28  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  28.93 
 
 
400 aa  125  1e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  34.26 
 
 
414 aa  125  2e-27  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  31.07 
 
 
480 aa  125  2e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  33.94 
 
 
420 aa  125  2e-27  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  30.68 
 
 
481 aa  122  9.999999999999999e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  30.43 
 
 
382 aa  120  3.9999999999999996e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  33.46 
 
 
493 aa  119  7.999999999999999e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  31.05 
 
 
520 aa  119  9.999999999999999e-26  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  31.65 
 
 
493 aa  119  9.999999999999999e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  30.43 
 
 
618 aa  117  3e-25  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  33.61 
 
 
468 aa  117  3.9999999999999997e-25  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  28.52 
 
 
560 aa  117  6e-25  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  33.97 
 
 
517 aa  114  3e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  35.71 
 
 
481 aa  112  9e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  27.92 
 
 
530 aa  112  1.0000000000000001e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  28.44 
 
 
465 aa  111  3e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_009565  TBFG_13874  transcriptional regulator  48.8 
 
 
137 aa  110  4.0000000000000004e-23  Mycobacterium tuberculosis F11  Bacteria  normal  0.0355258  normal 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  32.11 
 
 
506 aa  110  4.0000000000000004e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  29.23 
 
 
453 aa  110  8.000000000000001e-23  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  31.21 
 
 
684 aa  109  8.000000000000001e-23  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  29.28 
 
 
496 aa  108  2e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_013159  Svir_06070  cell envelope-related function transcriptional attenuator common domain protein  35.21 
 
 
514 aa  106  7e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.974325  normal  0.0563121 
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  30.43 
 
 
396 aa  104  3e-21  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  26.24 
 
 
319 aa  104  4e-21  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_009565  TBFG_13519  hypothetical protein  26.65 
 
 
512 aa  102  1e-20  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.100718 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  28.75 
 
 
419 aa  102  1e-20  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  35.48 
 
 
395 aa  101  3e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  31.34 
 
 
395 aa  101  3e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  31.33 
 
 
734 aa  101  3e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  27.72 
 
 
540 aa  100  5e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  32.31 
 
 
381 aa  100  8e-20  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  27.74 
 
 
379 aa  99.8  8e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  32.13 
 
 
526 aa  99.8  1e-19  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4513  cell envelope-related transcriptional attenuator  30.23 
 
 
699 aa  99.4  1e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  29.55 
 
 
520 aa  99.4  1e-19  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_008705  Mkms_4600  cell envelope-related transcriptional attenuator  30.23 
 
 
699 aa  99.4  1e-19  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4896  cell envelope-related transcriptional attenuator  30.23 
 
 
701 aa  99.4  1e-19  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  30.43 
 
 
445 aa  97.8  4e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_013530  Xcel_2594  cell envelope-related transcriptional attenuator  29.25 
 
 
442 aa  97.8  4e-19  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1540  cell envelope-related transcriptional attenuator  36.6 
 
 
328 aa  96.7  8e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.112437  n/a   
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  29.15 
 
 
619 aa  96.3  1e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_009338  Mflv_1666  cell envelope-related transcriptional attenuator  30.81 
 
 
649 aa  95.9  1e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_08810  cell envelope-related function transcriptional attenuator common domain protein  31.8 
 
 
374 aa  96.3  1e-18  Micrococcus luteus NCTC 2665  Bacteria  normal  0.155806  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  31.47 
 
 
349 aa  95.5  2e-18  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5087  cell envelope-related transcriptional attenuator  30.66 
 
 
687 aa  95.1  2e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4511  transcription attenuator LytR  30.16 
 
 
358 aa  95.1  2e-18  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6814  cell envelope-related transcriptional attenuator  28.77 
 
 
1336 aa  94.7  3e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
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