More than 300 homologs were found in PanDaTox collection
for query gene Ppha_2176 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_2176  3-isopropylmalate dehydratase, small subunit  100 
 
 
188 aa  384  1e-106  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0847  3-isopropylmalate dehydratase, small subunit  86.49 
 
 
188 aa  339  1e-92  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.189736  n/a   
 
 
-
 
NC_010803  Clim_0736  3-isopropylmalate dehydratase, small subunit  84.49 
 
 
188 aa  330  8e-90  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1899  3-isopropylmalate dehydratase, small subunit  82.89 
 
 
188 aa  323  1e-87  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0600  3-isopropylmalate dehydratase, small subunit  83.24 
 
 
190 aa  322  3e-87  Chlorobium luteolum DSM 273  Bacteria  normal  0.478357  normal 
 
 
-
 
NC_011059  Paes_0737  3-isopropylmalate dehydratase, small subunit  81.08 
 
 
186 aa  310  1e-83  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.988223 
 
 
-
 
NC_010831  Cphamn1_1723  aconitate hydratase domain protein  78.38 
 
 
187 aa  302  1.0000000000000001e-81  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.924323 
 
 
-
 
NC_013501  Rmar_0742  3-isopropylmalate dehydratase, small subunit  59.04 
 
 
189 aa  230  9e-60  Rhodothermus marinus DSM 4252  Bacteria  normal  0.337474  n/a   
 
 
-
 
NC_013517  Sterm_0113  3-isopropylmalate dehydratase, small subunit  58.89 
 
 
181 aa  223  1e-57  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1041  3-isopropylmalate dehydratase, small subunit  50 
 
 
183 aa  184  8e-46  Trichodesmium erythraeum IMS101  Bacteria  normal  0.107512  normal  0.0691273 
 
 
-
 
NC_010085  Nmar_0421  3-isopropylmalate dehydratase small subunit  44.58 
 
 
160 aa  130  1.0000000000000001e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0517519 
 
 
-
 
NC_009634  Mevan_1141  3-isopropylmalate dehydratase, small subunit  38.92 
 
 
167 aa  130  1.0000000000000001e-29  Methanococcus vannielii SB  Archaea  normal  0.685222  n/a   
 
 
-
 
NC_009975  MmarC6_0816  3-isopropylmalate dehydratase, small subunit  38.25 
 
 
167 aa  127  6e-29  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1540  3-isopropylmalate dehydratase, small subunit  37.7 
 
 
167 aa  127  9.000000000000001e-29  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1135  3-isopropylmalate dehydratase, small subunit  37.7 
 
 
167 aa  126  2.0000000000000002e-28  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A1338  3-isopropylmalate dehydratase small subunit  41.57 
 
 
162 aa  126  2.0000000000000002e-28  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0338  3-isopropylmalate dehydratase, small subunit  41.11 
 
 
165 aa  125  5e-28  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.0000000000213768  n/a   
 
 
-
 
NC_009715  CCV52592_1364  alginate O-acetylation protein  41.9 
 
 
160 aa  121  5e-27  Campylobacter curvus 525.92  Bacteria  normal  0.0200194  n/a   
 
 
-
 
NC_007575  Suden_1102  3-isopropylmalate dehydratase small subunit  42.54 
 
 
167 aa  121  7e-27  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2158  3-isopropylmalate dehydratase, small subunit  41.52 
 
 
185 aa  120  1.9999999999999998e-26  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.350414 
 
 
-
 
NC_007955  Mbur_1631  3-isopropylmalate dehydratase small subunit  40.45 
 
 
160 aa  119  3e-26  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.00197454  n/a   
 
 
-
 
NC_009486  Tpet_0365  3-isopropylmalate dehydratase small subunit  39.13 
 
 
166 aa  117  7.999999999999999e-26  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0382  3-isopropylmalate dehydratase small subunit  38.89 
 
 
164 aa  117  9.999999999999999e-26  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2988  3-isopropylmalate dehydratase, small subunit  37.43 
 
 
165 aa  116  1.9999999999999998e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.169045  normal 
 
 
-
 
NC_008554  Sfum_3030  3-isopropylmalate dehydratase, small subunit  37.43 
 
 
165 aa  116  1.9999999999999998e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.538319 
 
 
-
 
NC_009073  Pcal_1603  3-isopropylmalate dehydratase small subunit  38.89 
 
 
161 aa  115  3e-25  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_012034  Athe_2100  3-isopropylmalate dehydratase small subunit  39.23 
 
 
166 aa  114  6.9999999999999995e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00749076  n/a   
 
 
-
 
NC_008553  Mthe_0024  3-isopropylmalate dehydratase small subunit  36.87 
 
 
161 aa  114  1.0000000000000001e-24  Methanosaeta thermophila PT  Archaea  normal  0.321106  n/a   
 
 
-
 
NC_010424  Daud_0357  3-isopropylmalate dehydratase, small subunit  37.43 
 
 
164 aa  112  2.0000000000000002e-24  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.427238  n/a   
 
 
-
 
NC_009802  CCC13826_0035  3-isopropylmalate dehydratase small subunit  39.89 
 
 
161 aa  112  3e-24  Campylobacter concisus 13826  Bacteria  normal  0.158163  n/a   
 
 
-
 
NC_011830  Dhaf_2486  3-isopropylmalate dehydratase, small subunit  40 
 
 
162 aa  112  3e-24  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0441  3-isopropylmalate dehydratase, small subunit  41.11 
 
 
165 aa  112  3e-24  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  0.969002  n/a   
 
 
-
 
NC_011661  Dtur_1192  3-isopropylmalate dehydratase, small subunit  38.89 
 
 
168 aa  112  3e-24  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_0347  3-isopropylmalate dehydratase, small subunit  36.07 
 
 
168 aa  112  4.0000000000000004e-24  Methanococcus aeolicus Nankai-3  Archaea  normal  0.135127  n/a   
 
 
-
 
NC_013173  Dbac_1741  3-isopropylmalate dehydratase small subunit  39.89 
 
 
164 aa  111  5e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1517  3-isopropylmalate dehydratase, small subunit  40.22 
 
 
162 aa  111  6e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.292796  n/a   
 
 
-
 
NC_010525  Tneu_0831  3-isopropylmalate dehydratase small subunit  38.42 
 
 
162 aa  110  1.0000000000000001e-23  Thermoproteus neutrophilus V24Sta  Archaea  normal  normal 
 
 
-
 
NC_009253  Dred_0287  3-isopropylmalate dehydratase, small subunit  39.55 
 
 
166 aa  110  1.0000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0016  3-isopropylmalate dehydratase small subunit  37.22 
 
 
160 aa  108  4.0000000000000004e-23  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_1465  3-isopropylmalate dehydratase, small subunit  36.26 
 
 
168 aa  108  6e-23  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.00596899  n/a   
 
 
-
 
NC_009635  Maeo_0652  3-isopropylmalate dehydratase, small subunit  37.22 
 
 
165 aa  108  7.000000000000001e-23  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009376  Pars_2062  3-isopropylmalate dehydratase small subunit  37.08 
 
 
160 aa  107  8.000000000000001e-23  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal  0.127412 
 
 
-
 
NC_009975  MmarC6_0529  3-isopropylmalate dehydratase, small subunit  36.72 
 
 
161 aa  107  8.000000000000001e-23  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_002936  DET0827  3-isopropylmalate dehydratase small subunit  34.44 
 
 
166 aa  107  1e-22  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_731  3-isopropylmalate dehydratase, small subunit  34.44 
 
 
166 aa  107  1e-22  Dehalococcoides sp. VS  Bacteria  normal  0.0550473  n/a   
 
 
-
 
NC_008346  Swol_2141  3-isopropylmalate dehydratase, small subunit  37.78 
 
 
163 aa  107  1e-22  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2210  3-isopropylmalate dehydratase, small subunit  36.52 
 
 
189 aa  106  2e-22  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.0000117372  n/a   
 
 
-
 
NC_013223  Dret_1457  3-isopropylmalate dehydratase small subunit  37.85 
 
 
167 aa  106  2e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.376362  normal  0.219232 
 
 
-
 
NC_013204  Elen_0584  3-isopropylmalate dehydratase, small subunit  39.53 
 
 
165 aa  106  2e-22  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00990382  normal 
 
 
-
 
NC_011898  Ccel_0127  3-isopropylmalate dehydratase small subunit  35.23 
 
 
163 aa  105  3e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1021  3-isopropylmalate dehydratase small subunit  36.93 
 
 
159 aa  105  3e-22  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.0000213685  n/a   
 
 
-
 
NC_013170  Ccur_04380  3-isopropylmalate dehydratase, small subunit  37.08 
 
 
178 aa  105  3e-22  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.96235 
 
 
-
 
NC_009637  MmarC7_1379  3-isopropylmalate dehydratase, small subunit  35.59 
 
 
161 aa  105  5e-22  Methanococcus maripaludis C7  Archaea  normal  normal  0.132083 
 
 
-
 
NC_009135  MmarC5_1257  3-isopropylmalate dehydratase, small subunit  35.75 
 
 
161 aa  104  6e-22  Methanococcus maripaludis C5  Archaea  normal  0.147077  n/a   
 
 
-
 
NC_008701  Pisl_1813  3-isopropylmalate dehydratase small subunit  38.2 
 
 
161 aa  105  6e-22  Pyrobaculum islandicum DSM 4184  Archaea  normal  hitchhiker  0.00000193523 
 
 
-
 
NC_010644  Emin_0403  3-isopropylmalate dehydratase small subunit  35.91 
 
 
164 aa  104  7e-22  Elusimicrobium minutum Pei191  Bacteria  normal  normal  0.583067 
 
 
-
 
NC_009714  CHAB381_1265  3-isopropylmalate dehydratase small subunit  38.64 
 
 
159 aa  104  8e-22  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0746  3-isopropylmalate dehydratase small subunit  33.89 
 
 
166 aa  103  1e-21  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0039277  n/a   
 
 
-
 
NC_013522  Taci_1611  3-isopropylmalate dehydratase, small subunit  36.16 
 
 
167 aa  103  1e-21  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009440  Msed_0829  3-isopropylmalate dehydratase small subunit  37.64 
 
 
161 aa  102  3e-21  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_010424  Daud_1037  3-isopropylmalate dehydratase, small subunit  34.62 
 
 
166 aa  102  3e-21  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0645  3-isopropylmalate dehydratase small subunit  34.04 
 
 
166 aa  102  4e-21  Thermotoga sp. RQ2  Bacteria  normal  0.014767  n/a   
 
 
-
 
NC_011883  Ddes_0507  3-isopropylmalate dehydratase small subunit  35.96 
 
 
165 aa  102  4e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0620  3-isopropylmalate dehydratase small subunit  34.04 
 
 
166 aa  102  4e-21  Thermotoga petrophila RKU-1  Bacteria  normal  0.0153606  n/a   
 
 
-
 
NC_013216  Dtox_0597  3-isopropylmalate dehydrogenase  37.71 
 
 
523 aa  102  5e-21  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000598819  normal 
 
 
-
 
NC_009954  Cmaq_1173  3-isopropylmalate dehydratase small subunit  35.16 
 
 
175 aa  101  8e-21  Caldivirga maquilingensis IC-167  Archaea  normal  normal  0.595401 
 
 
-
 
NC_013385  Adeg_0228  3-isopropylmalate dehydratase, small subunit  35.56 
 
 
163 aa  100  1e-20  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2221  3-isopropylmalate dehydratase, small subunit  33.53 
 
 
162 aa  100  1e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0377  3-isopropylmalate dehydratase, small subunit family protein  32.96 
 
 
166 aa  100  1e-20  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_1948  3-isopropylmalate dehydratase, small subunit  38.51 
 
 
163 aa  99.8  2e-20  Methanoculleus marisnigri JR1  Archaea  normal  0.353439  n/a   
 
 
-
 
NC_012029  Hlac_1103  3-isopropylmalate dehydratase, small subunit  35.36 
 
 
175 aa  99.8  2e-20  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A2270  3-isopropylmalate dehydratase  33.52 
 
 
163 aa  99.4  3e-20  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.310524  normal  0.0869974 
 
 
-
 
NC_011769  DvMF_1793  3-isopropylmalate dehydratase small subunit  34.46 
 
 
163 aa  99  4e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.845363 
 
 
-
 
NC_009634  Mevan_1368  3-isopropylmalate dehydratase, small subunit  34.07 
 
 
161 aa  98.6  4e-20  Methanococcus vannielii SB  Archaea  normal  0.205096  n/a   
 
 
-
 
NC_010001  Cphy_3355  3-isopropylmalate dehydratase small subunit  33.71 
 
 
165 aa  98.2  6e-20  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10880  3-isopropylmalate dehydratase, small subunit  34.68 
 
 
165 aa  98.2  7e-20  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3220  3-isopropylmalate dehydratase small subunit  37.64 
 
 
167 aa  97.8  7e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0128  3-isopropylmalate dehydratase, small subunit  34.46 
 
 
163 aa  97.8  7e-20  Aciduliprofundum boonei T469  Archaea  normal  0.225854  n/a   
 
 
-
 
NC_007644  Moth_2253  3-isopropylmalate dehydratase small subunit  42.78 
 
 
166 aa  97.8  9e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1101  3-isopropylmalate dehydratase, small subunit  34.08 
 
 
166 aa  97.1  1e-19  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1365  3-isopropylmalate dehydratase, small subunit  29.73 
 
 
172 aa  95.9  3e-19  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008942  Mlab_0608  3-isopropylmalate dehydratase, small subunit  36.72 
 
 
158 aa  96.3  3e-19  Methanocorpusculum labreanum Z  Archaea  normal  0.864497  normal  0.293783 
 
 
-
 
NC_011661  Dtur_1631  3-isopropylmalate dehydratase, small subunit  34.07 
 
 
166 aa  95.5  4e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0389  3-isopropylmalate dehydratase small subunit  34.46 
 
 
167 aa  95.5  4e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  0.373722  normal 
 
 
-
 
NC_007355  Mbar_A0244  3-isopropylmalate dehydratase, small subunit  32.42 
 
 
165 aa  94.7  7e-19  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
CP001800  Ssol_0274  3-isopropylmalate dehydratase, small subunit  37.43 
 
 
165 aa  94.4  9e-19  Sulfolobus solfataricus 98/2  Archaea  normal  0.449089  n/a   
 
 
-
 
NC_009523  RoseRS_1056  homoaconitate hydratase small subunit  35.33 
 
 
166 aa  94.4  9e-19  Roseiflexus sp. RS-1  Bacteria  normal  0.23213  normal 
 
 
-
 
NC_011831  Cagg_3601  3-isopropylmalate dehydratase small subunit  32.43 
 
 
166 aa  94  1e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.162666 
 
 
-
 
NC_010003  Pmob_1587  3-isopropylmalate dehydratase, small subunit  32.58 
 
 
164 aa  93.6  2e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3303  3-isopropylmalate dehydratase small subunit  35.2 
 
 
165 aa  93.2  2e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.978934  n/a   
 
 
-
 
NC_008025  Dgeo_1032  3-isopropylmalate dehydratase small subunit  35.88 
 
 
174 aa  93.6  2e-18  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.118082  hitchhiker  0.00124766 
 
 
-
 
NC_011898  Ccel_1621  3-isopropylmalate dehydratase, small subunit  33.33 
 
 
166 aa  93.2  2e-18  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0186  3-isopropylmalate dehydratase, small subunit  36.21 
 
 
165 aa  92.8  3e-18  Methanosphaerula palustris E1-9c  Archaea  normal  0.388139  normal  0.0344382 
 
 
-
 
NC_008553  Mthe_0853  3-isopropylmalate dehydratase, small subunit  32.04 
 
 
161 aa  92.4  3e-18  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_007796  Mhun_2362  3-isopropylmalate dehydratase, small subunit  36.76 
 
 
162 aa  92.4  4e-18  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.478432 
 
 
-
 
NC_009767  Rcas_3472  homoaconitate hydratase small subunit  34.05 
 
 
166 aa  91.7  5e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0185812 
 
 
-
 
NC_008942  Mlab_0234  hypothetical protein  35.23 
 
 
158 aa  92  5e-18  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_013526  Tter_2763  3-isopropylmalate dehydratase, small subunit  33.14 
 
 
159 aa  91.7  7e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.445719  n/a   
 
 
-
 
NC_007955  Mbur_1578  3-isopropylmalate dehydratase, small subunit  30.22 
 
 
163 aa  90.5  1e-17  Methanococcoides burtonii DSM 6242  Archaea  normal  0.0376678  n/a   
 
 
-
 
NC_010003  Pmob_1705  3-isopropylmalate dehydratase, small subunit  30.94 
 
 
167 aa  87.8  7e-17  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
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