More than 300 homologs were found in PanDaTox collection
for query gene Rmar_0742 on replicon NC_013501
Organism: Rhodothermus marinus DSM 4252



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013501  Rmar_0742  3-isopropylmalate dehydratase, small subunit  100 
 
 
189 aa  384  1e-106  Rhodothermus marinus DSM 4252  Bacteria  normal  0.337474  n/a   
 
 
-
 
NC_010803  Clim_0736  3-isopropylmalate dehydratase, small subunit  63.24 
 
 
188 aa  242  3e-63  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0600  3-isopropylmalate dehydratase, small subunit  60 
 
 
190 aa  239  1e-62  Chlorobium luteolum DSM 273  Bacteria  normal  0.478357  normal 
 
 
-
 
NC_011059  Paes_0737  3-isopropylmalate dehydratase, small subunit  60.54 
 
 
186 aa  239  2e-62  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.988223 
 
 
-
 
NC_008639  Cpha266_0847  3-isopropylmalate dehydratase, small subunit  61.08 
 
 
188 aa  236  1e-61  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.189736  n/a   
 
 
-
 
NC_010831  Cphamn1_1723  aconitate hydratase domain protein  60.54 
 
 
187 aa  234  7e-61  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.924323 
 
 
-
 
NC_007514  Cag_1899  3-isopropylmalate dehydratase, small subunit  61.08 
 
 
188 aa  233  2.0000000000000002e-60  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2176  3-isopropylmalate dehydratase, small subunit  59.04 
 
 
188 aa  230  9e-60  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0113  3-isopropylmalate dehydratase, small subunit  56.67 
 
 
181 aa  218  3e-56  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1041  3-isopropylmalate dehydratase, small subunit  45.41 
 
 
183 aa  162  2.0000000000000002e-39  Trichodesmium erythraeum IMS101  Bacteria  normal  0.107512  normal  0.0691273 
 
 
-
 
NC_008554  Sfum_2988  3-isopropylmalate dehydratase, small subunit  41.01 
 
 
165 aa  123  1e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.169045  normal 
 
 
-
 
NC_008554  Sfum_3030  3-isopropylmalate dehydratase, small subunit  41.01 
 
 
165 aa  123  1e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.538319 
 
 
-
 
NC_009073  Pcal_1603  3-isopropylmalate dehydratase small subunit  45.51 
 
 
161 aa  122  2e-27  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_010730  SYO3AOP1_0338  3-isopropylmalate dehydratase, small subunit  42.31 
 
 
165 aa  120  9.999999999999999e-27  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.0000000000213768  n/a   
 
 
-
 
NC_007355  Mbar_A1338  3-isopropylmalate dehydratase small subunit  43.26 
 
 
162 aa  120  9.999999999999999e-27  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009975  MmarC6_0816  3-isopropylmalate dehydratase, small subunit  41.21 
 
 
167 aa  120  9.999999999999999e-27  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_010085  Nmar_0421  3-isopropylmalate dehydratase small subunit  39.05 
 
 
160 aa  119  3.9999999999999996e-26  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0517519 
 
 
-
 
NC_009637  MmarC7_1135  3-isopropylmalate dehydratase, small subunit  40.11 
 
 
167 aa  119  3.9999999999999996e-26  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_011661  Dtur_1192  3-isopropylmalate dehydratase, small subunit  41.34 
 
 
168 aa  118  6e-26  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010525  Tneu_0831  3-isopropylmalate dehydratase small subunit  42.78 
 
 
162 aa  118  6e-26  Thermoproteus neutrophilus V24Sta  Archaea  normal  normal 
 
 
-
 
NC_009135  MmarC5_1540  3-isopropylmalate dehydratase, small subunit  40.11 
 
 
167 aa  118  7e-26  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009376  Pars_2062  3-isopropylmalate dehydratase small subunit  41.34 
 
 
160 aa  115  3e-25  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal  0.127412 
 
 
-
 
NC_009715  CCV52592_1364  alginate O-acetylation protein  38.98 
 
 
160 aa  115  3.9999999999999997e-25  Campylobacter curvus 525.92  Bacteria  normal  0.0200194  n/a   
 
 
-
 
NC_012034  Athe_2100  3-isopropylmalate dehydratase small subunit  40.45 
 
 
166 aa  114  8.999999999999998e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00749076  n/a   
 
 
-
 
NC_013552  DhcVS_731  3-isopropylmalate dehydratase, small subunit  38.55 
 
 
166 aa  114  1.0000000000000001e-24  Dehalococcoides sp. VS  Bacteria  normal  0.0550473  n/a   
 
 
-
 
NC_010718  Nther_2158  3-isopropylmalate dehydratase, small subunit  38.07 
 
 
185 aa  113  1.0000000000000001e-24  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.350414 
 
 
-
 
NC_011883  Ddes_0507  3-isopropylmalate dehydratase small subunit  41.67 
 
 
165 aa  113  2.0000000000000002e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_1141  3-isopropylmalate dehydratase, small subunit  39.01 
 
 
167 aa  113  2.0000000000000002e-24  Methanococcus vannielii SB  Archaea  normal  0.685222  n/a   
 
 
-
 
NC_007955  Mbur_1631  3-isopropylmalate dehydratase small subunit  43.26 
 
 
160 aa  113  2.0000000000000002e-24  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.00197454  n/a   
 
 
-
 
NC_009455  DehaBAV1_0746  3-isopropylmalate dehydratase small subunit  37.99 
 
 
166 aa  112  3e-24  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0039277  n/a   
 
 
-
 
NC_010424  Daud_0357  3-isopropylmalate dehydratase, small subunit  38.55 
 
 
164 aa  112  3e-24  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.427238  n/a   
 
 
-
 
NC_013173  Dbac_1741  3-isopropylmalate dehydratase small subunit  40.78 
 
 
164 aa  112  3e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0827  3-isopropylmalate dehydratase small subunit  37.99 
 
 
166 aa  112  4.0000000000000004e-24  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0035  3-isopropylmalate dehydratase small subunit  38.64 
 
 
161 aa  112  4.0000000000000004e-24  Campylobacter concisus 13826  Bacteria  normal  0.158163  n/a   
 
 
-
 
NC_008701  Pisl_1813  3-isopropylmalate dehydratase small subunit  41.81 
 
 
161 aa  111  6e-24  Pyrobaculum islandicum DSM 4184  Archaea  normal  hitchhiker  0.00000193523 
 
 
-
 
NC_010483  TRQ2_0382  3-isopropylmalate dehydratase small subunit  37.99 
 
 
164 aa  109  3e-23  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0365  3-isopropylmalate dehydratase small subunit  37.99 
 
 
166 aa  109  3e-23  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1793  3-isopropylmalate dehydratase small subunit  40.34 
 
 
163 aa  106  2e-22  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.845363 
 
 
-
 
NC_010483  TRQ2_0645  3-isopropylmalate dehydratase small subunit  36.96 
 
 
166 aa  105  3e-22  Thermotoga sp. RQ2  Bacteria  normal  0.014767  n/a   
 
 
-
 
NC_010320  Teth514_0016  3-isopropylmalate dehydratase small subunit  35.91 
 
 
160 aa  105  4e-22  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0620  3-isopropylmalate dehydratase small subunit  36.96 
 
 
166 aa  105  4e-22  Thermotoga petrophila RKU-1  Bacteria  normal  0.0153606  n/a   
 
 
-
 
NC_011830  Dhaf_2486  3-isopropylmalate dehydratase, small subunit  38.73 
 
 
162 aa  104  8e-22  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1611  3-isopropylmalate dehydratase, small subunit  40.11 
 
 
167 aa  104  9e-22  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1365  3-isopropylmalate dehydratase, small subunit  38.71 
 
 
172 aa  103  1e-21  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2141  3-isopropylmalate dehydratase, small subunit  37.36 
 
 
163 aa  103  1e-21  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1021  3-isopropylmalate dehydratase small subunit  37.21 
 
 
159 aa  104  1e-21  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.0000213685  n/a   
 
 
-
 
NC_008751  Dvul_0389  3-isopropylmalate dehydratase small subunit  40 
 
 
167 aa  104  1e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  0.373722  normal 
 
 
-
 
NC_011126  HY04AAS1_0441  3-isopropylmalate dehydratase, small subunit  40.45 
 
 
165 aa  103  2e-21  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  0.969002  n/a   
 
 
-
 
NC_009635  Maeo_0347  3-isopropylmalate dehydratase, small subunit  37.36 
 
 
168 aa  103  2e-21  Methanococcus aeolicus Nankai-3  Archaea  normal  0.135127  n/a   
 
 
-
 
NC_009012  Cthe_2210  3-isopropylmalate dehydratase, small subunit  37.85 
 
 
189 aa  103  2e-21  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.0000117372  n/a   
 
 
-
 
NC_009635  Maeo_0652  3-isopropylmalate dehydratase, small subunit  36.76 
 
 
165 aa  102  3e-21  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_010644  Emin_0403  3-isopropylmalate dehydratase small subunit  35.91 
 
 
164 aa  102  3e-21  Elusimicrobium minutum Pei191  Bacteria  normal  normal  0.583067 
 
 
-
 
NC_008553  Mthe_0024  3-isopropylmalate dehydratase small subunit  37.08 
 
 
161 aa  102  3e-21  Methanosaeta thermophila PT  Archaea  normal  0.321106  n/a   
 
 
-
 
NC_009253  Dred_0287  3-isopropylmalate dehydratase, small subunit  36.93 
 
 
166 aa  102  5e-21  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1457  3-isopropylmalate dehydratase small subunit  39.43 
 
 
167 aa  101  6e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.376362  normal  0.219232 
 
 
-
 
NC_009714  CHAB381_1265  3-isopropylmalate dehydratase small subunit  37.57 
 
 
159 aa  101  7e-21  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3220  3-isopropylmalate dehydratase small subunit  40.68 
 
 
167 aa  100  1e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008942  Mlab_0608  3-isopropylmalate dehydratase, small subunit  39.89 
 
 
158 aa  100  1e-20  Methanocorpusculum labreanum Z  Archaea  normal  0.864497  normal  0.293783 
 
 
-
 
NC_014150  Bmur_2221  3-isopropylmalate dehydratase, small subunit  32.79 
 
 
162 aa  99.4  3e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1631  3-isopropylmalate dehydratase, small subunit  37.43 
 
 
166 aa  99  4e-20  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3355  3-isopropylmalate dehydratase small subunit  35.96 
 
 
165 aa  99  4e-20  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0127  3-isopropylmalate dehydratase small subunit  34.83 
 
 
163 aa  98.6  5e-20  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0584  3-isopropylmalate dehydratase, small subunit  36.36 
 
 
165 aa  98.2  6e-20  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00990382  normal 
 
 
-
 
NC_013170  Ccur_04380  3-isopropylmalate dehydratase, small subunit  35.59 
 
 
178 aa  98.2  6e-20  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.96235 
 
 
-
 
NC_011899  Hore_10880  3-isopropylmalate dehydratase, small subunit  36.67 
 
 
165 aa  97.8  8e-20  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0186  3-isopropylmalate dehydratase, small subunit  38.42 
 
 
165 aa  97.8  9e-20  Methanosphaerula palustris E1-9c  Archaea  normal  0.388139  normal  0.0344382 
 
 
-
 
NC_013385  Adeg_0228  3-isopropylmalate dehydratase, small subunit  37.78 
 
 
163 aa  97.1  1e-19  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2763  3-isopropylmalate dehydratase, small subunit  38.07 
 
 
159 aa  97.4  1e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.445719  n/a   
 
 
-
 
NC_007575  Suden_1102  3-isopropylmalate dehydratase small subunit  37.29 
 
 
167 aa  97.1  1e-19  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1032  3-isopropylmalate dehydratase small subunit  38.37 
 
 
174 aa  97.4  1e-19  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.118082  hitchhiker  0.00124766 
 
 
-
 
NC_008346  Swol_0377  3-isopropylmalate dehydratase, small subunit family protein  35.87 
 
 
166 aa  97.1  1e-19  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1517  3-isopropylmalate dehydratase, small subunit  37.64 
 
 
162 aa  97.1  2e-19  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.292796  n/a   
 
 
-
 
NC_013926  Aboo_1465  3-isopropylmalate dehydratase, small subunit  36.36 
 
 
168 aa  96.3  2e-19  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.00596899  n/a   
 
 
-
 
NC_011898  Ccel_1621  3-isopropylmalate dehydratase, small subunit  33.89 
 
 
166 aa  96.7  2e-19  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1037  3-isopropylmalate dehydratase, small subunit  37.7 
 
 
166 aa  97.1  2e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_1368  3-isopropylmalate dehydratase, small subunit  34.66 
 
 
161 aa  94.7  8e-19  Methanococcus vannielii SB  Archaea  normal  0.205096  n/a   
 
 
-
 
NC_014212  Mesil_0441  3-isopropylmalate dehydratase, small subunit  37.08 
 
 
166 aa  94.4  1e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  hitchhiker  0.00422672 
 
 
-
 
NC_013216  Dtox_0597  3-isopropylmalate dehydrogenase  33.71 
 
 
523 aa  94.4  1e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000598819  normal 
 
 
-
 
NC_009440  Msed_0829  3-isopropylmalate dehydratase small subunit  36.07 
 
 
161 aa  93.6  2e-18  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_2076  3-isopropylmalate dehydratase, small subunit  34.62 
 
 
165 aa  92.8  2e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.894184  normal 
 
 
-
 
NC_010003  Pmob_1587  3-isopropylmalate dehydratase, small subunit  35.2 
 
 
164 aa  93.2  2e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_0853  3-isopropylmalate dehydratase, small subunit  36.81 
 
 
161 aa  93.2  2e-18  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_007955  Mbur_1578  3-isopropylmalate dehydratase, small subunit  36.02 
 
 
163 aa  92.8  3e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  0.0376678  n/a   
 
 
-
 
NC_013385  Adeg_1101  3-isopropylmalate dehydratase, small subunit  37.7 
 
 
166 aa  92.4  3e-18  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1705  3-isopropylmalate dehydratase, small subunit  33.7 
 
 
167 aa  92.4  3e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_0274  3-isopropylmalate dehydratase, small subunit  36.41 
 
 
165 aa  92.4  4e-18  Sulfolobus solfataricus 98/2  Archaea  normal  0.449089  n/a   
 
 
-
 
NC_009975  MmarC6_0529  3-isopropylmalate dehydratase, small subunit  35.03 
 
 
161 aa  92.4  4e-18  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_007644  Moth_2253  3-isopropylmalate dehydratase small subunit  42.22 
 
 
166 aa  92.4  4e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A2270  3-isopropylmalate dehydratase  34.76 
 
 
163 aa  91.7  6e-18  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.310524  normal  0.0869974 
 
 
-
 
NC_013946  Mrub_2727  3-isopropylmalate dehydratase small subunit  34.81 
 
 
167 aa  91.7  6e-18  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009637  MmarC7_1379  3-isopropylmalate dehydratase, small subunit  34.46 
 
 
161 aa  91.3  7e-18  Methanococcus maripaludis C7  Archaea  normal  normal  0.132083 
 
 
-
 
NC_009135  MmarC5_1257  3-isopropylmalate dehydratase, small subunit  34.27 
 
 
161 aa  91.3  8e-18  Methanococcus maripaludis C5  Archaea  normal  0.147077  n/a   
 
 
-
 
NC_009051  Memar_0635  3-isopropylmalate dehydratase, small subunit  37.57 
 
 
156 aa  91.3  8e-18  Methanoculleus marisnigri JR1  Archaea  normal  0.100869  n/a   
 
 
-
 
NC_007355  Mbar_A0244  3-isopropylmalate dehydratase, small subunit  33.51 
 
 
165 aa  90.5  1e-17  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013552  DhcVS_391  aconitase/homoaconitase C-terminal domain protein, 3-isopropylmalate dehydratase small subunit  34.92 
 
 
167 aa  90.9  1e-17  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_1103  3-isopropylmalate dehydratase, small subunit  37.43 
 
 
175 aa  90.9  1e-17  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0426  3-isopropylmalate dehydratase small subunit  35.45 
 
 
167 aa  90.9  1e-17  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0449  3-isopropylmalate dehydratase small subunit  35.45 
 
 
167 aa  90.1  2e-17  Dehalococcoides ethenogenes 195  Bacteria  normal  0.844567  n/a   
 
 
-
 
NC_013926  Aboo_0128  3-isopropylmalate dehydratase, small subunit  35.59 
 
 
163 aa  90.1  2e-17  Aciduliprofundum boonei T469  Archaea  normal  0.225854  n/a   
 
 
-
 
NC_009954  Cmaq_1173  3-isopropylmalate dehydratase small subunit  34.38 
 
 
175 aa  89.4  3e-17  Caldivirga maquilingensis IC-167  Archaea  normal  normal  0.595401 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>