More than 300 homologs were found in PanDaTox collection
for query gene Cthe_2210 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2210  3-isopropylmalate dehydratase, small subunit  100 
 
 
189 aa  385  1e-106  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.0000117372  n/a   
 
 
-
 
NC_011898  Ccel_0127  3-isopropylmalate dehydratase small subunit  77.78 
 
 
163 aa  266  8.999999999999999e-71  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3355  3-isopropylmalate dehydratase small subunit  75.31 
 
 
165 aa  251  3e-66  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2100  3-isopropylmalate dehydratase small subunit  70.99 
 
 
166 aa  240  9e-63  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00749076  n/a   
 
 
-
 
NC_010320  Teth514_0016  3-isopropylmalate dehydratase small subunit  67.92 
 
 
160 aa  236  2e-61  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2221  3-isopropylmalate dehydratase, small subunit  69.57 
 
 
162 aa  236  2e-61  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10880  3-isopropylmalate dehydratase, small subunit  67.9 
 
 
165 aa  229  1e-59  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0287  3-isopropylmalate dehydratase, small subunit  62.96 
 
 
166 aa  229  2e-59  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0357  3-isopropylmalate dehydratase, small subunit  64.2 
 
 
164 aa  228  6e-59  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.427238  n/a   
 
 
-
 
NC_010003  Pmob_1587  3-isopropylmalate dehydratase, small subunit  65.03 
 
 
164 aa  224  7e-58  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0597  3-isopropylmalate dehydrogenase  64.2 
 
 
523 aa  224  8e-58  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000598819  normal 
 
 
-
 
NC_013204  Elen_0584  3-isopropylmalate dehydratase, small subunit  63.64 
 
 
165 aa  223  9e-58  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00990382  normal 
 
 
-
 
NC_011830  Dhaf_2486  3-isopropylmalate dehydratase, small subunit  62.99 
 
 
162 aa  221  3e-57  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1192  3-isopropylmalate dehydratase, small subunit  62.35 
 
 
168 aa  222  3e-57  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2141  3-isopropylmalate dehydratase, small subunit  65.41 
 
 
163 aa  219  1.9999999999999999e-56  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2988  3-isopropylmalate dehydratase, small subunit  60.49 
 
 
165 aa  215  2.9999999999999998e-55  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.169045  normal 
 
 
-
 
NC_008554  Sfum_3030  3-isopropylmalate dehydratase, small subunit  60.49 
 
 
165 aa  215  2.9999999999999998e-55  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.538319 
 
 
-
 
NC_010730  SYO3AOP1_0338  3-isopropylmalate dehydratase, small subunit  63.35 
 
 
165 aa  215  4e-55  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.0000000000213768  n/a   
 
 
-
 
NC_013385  Adeg_0228  3-isopropylmalate dehydratase, small subunit  58.02 
 
 
163 aa  214  8e-55  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_04380  3-isopropylmalate dehydratase, small subunit  59.88 
 
 
178 aa  212  2.9999999999999995e-54  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.96235 
 
 
-
 
NC_002936  DET0827  3-isopropylmalate dehydratase small subunit  60.38 
 
 
166 aa  207  9e-53  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1021  3-isopropylmalate dehydratase small subunit  63.06 
 
 
159 aa  207  9e-53  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.0000213685  n/a   
 
 
-
 
NC_013552  DhcVS_731  3-isopropylmalate dehydratase, small subunit  59.75 
 
 
166 aa  206  2e-52  Dehalococcoides sp. VS  Bacteria  normal  0.0550473  n/a   
 
 
-
 
NC_009455  DehaBAV1_0746  3-isopropylmalate dehydratase small subunit  59.75 
 
 
166 aa  205  3e-52  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0039277  n/a   
 
 
-
 
NC_007575  Suden_1102  3-isopropylmalate dehydratase small subunit  57.23 
 
 
167 aa  201  5e-51  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0382  3-isopropylmalate dehydratase small subunit  59.76 
 
 
164 aa  201  5e-51  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1364  alginate O-acetylation protein  59.87 
 
 
160 aa  200  9.999999999999999e-51  Campylobacter curvus 525.92  Bacteria  normal  0.0200194  n/a   
 
 
-
 
NC_009486  Tpet_0365  3-isopropylmalate dehydratase small subunit  59.15 
 
 
166 aa  199  1.9999999999999998e-50  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1265  3-isopropylmalate dehydratase small subunit  60.13 
 
 
159 aa  199  1.9999999999999998e-50  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1611  3-isopropylmalate dehydratase, small subunit  54.32 
 
 
167 aa  199  3e-50  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0441  3-isopropylmalate dehydratase, small subunit  58.79 
 
 
165 aa  198  3e-50  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  0.969002  n/a   
 
 
-
 
NC_007644  Moth_2253  3-isopropylmalate dehydratase small subunit  63.58 
 
 
166 aa  197  7e-50  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009802  CCC13826_0035  3-isopropylmalate dehydratase small subunit  59.12 
 
 
161 aa  196  2.0000000000000003e-49  Campylobacter concisus 13826  Bacteria  normal  0.158163  n/a   
 
 
-
 
NC_013512  Sdel_1517  3-isopropylmalate dehydratase, small subunit  57.86 
 
 
162 aa  196  2.0000000000000003e-49  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.292796  n/a   
 
 
-
 
NC_008553  Mthe_0024  3-isopropylmalate dehydratase small subunit  57.59 
 
 
161 aa  194  5.000000000000001e-49  Methanosaeta thermophila PT  Archaea  normal  0.321106  n/a   
 
 
-
 
NC_009635  Maeo_0347  3-isopropylmalate dehydratase, small subunit  53.99 
 
 
168 aa  194  6e-49  Methanococcus aeolicus Nankai-3  Archaea  normal  0.135127  n/a   
 
 
-
 
NC_009975  MmarC6_0816  3-isopropylmalate dehydratase, small subunit  55.83 
 
 
167 aa  192  2e-48  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1540  3-isopropylmalate dehydratase, small subunit  54.6 
 
 
167 aa  191  5e-48  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1135  3-isopropylmalate dehydratase, small subunit  54.6 
 
 
167 aa  191  7e-48  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009634  Mevan_1141  3-isopropylmalate dehydratase, small subunit  55.97 
 
 
167 aa  190  1e-47  Methanococcus vannielii SB  Archaea  normal  0.685222  n/a   
 
 
-
 
NC_013223  Dret_1457  3-isopropylmalate dehydratase small subunit  52.47 
 
 
167 aa  189  2.9999999999999997e-47  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.376362  normal  0.219232 
 
 
-
 
NC_007355  Mbar_A1338  3-isopropylmalate dehydratase small subunit  51.85 
 
 
162 aa  187  8e-47  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_008553  Mthe_0853  3-isopropylmalate dehydratase, small subunit  55.06 
 
 
161 aa  184  5e-46  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_007519  Dde_3220  3-isopropylmalate dehydratase small subunit  49.7 
 
 
167 aa  182  3e-45  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0645  3-isopropylmalate dehydratase small subunit  53.46 
 
 
166 aa  179  2e-44  Thermotoga sp. RQ2  Bacteria  normal  0.014767  n/a   
 
 
-
 
NC_009486  Tpet_0620  3-isopropylmalate dehydratase small subunit  53.46 
 
 
166 aa  179  2e-44  Thermotoga petrophila RKU-1  Bacteria  normal  0.0153606  n/a   
 
 
-
 
NC_011883  Ddes_0507  3-isopropylmalate dehydratase small subunit  51.23 
 
 
165 aa  178  4e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1631  3-isopropylmalate dehydratase small subunit  52.2 
 
 
160 aa  176  2e-43  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.00197454  n/a   
 
 
-
 
NC_012029  Hlac_1103  3-isopropylmalate dehydratase, small subunit  45.96 
 
 
175 aa  173  9.999999999999999e-43  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_009440  Msed_0829  3-isopropylmalate dehydratase small subunit  52.76 
 
 
161 aa  169  3e-41  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_008751  Dvul_0389  3-isopropylmalate dehydratase small subunit  46.3 
 
 
167 aa  169  3e-41  Desulfovibrio vulgaris DP4  Bacteria  normal  0.373722  normal 
 
 
-
 
NC_010525  Tneu_0831  3-isopropylmalate dehydratase small subunit  47.8 
 
 
162 aa  167  8e-41  Thermoproteus neutrophilus V24Sta  Archaea  normal  normal 
 
 
-
 
CP001800  Ssol_0274  3-isopropylmalate dehydratase, small subunit  51.53 
 
 
165 aa  166  1e-40  Sulfolobus solfataricus 98/2  Archaea  normal  0.449089  n/a   
 
 
-
 
NC_007355  Mbar_A0244  3-isopropylmalate dehydratase, small subunit  51.28 
 
 
165 aa  166  2e-40  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009253  Dred_2337  3-isopropylmalate dehydratase, small subunit  51.83 
 
 
166 aa  165  2.9999999999999998e-40  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1705  3-isopropylmalate dehydratase, small subunit  49.69 
 
 
167 aa  165  2.9999999999999998e-40  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1793  3-isopropylmalate dehydratase small subunit  46.91 
 
 
163 aa  165  2.9999999999999998e-40  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.845363 
 
 
-
 
NC_008701  Pisl_1813  3-isopropylmalate dehydratase small subunit  49.69 
 
 
161 aa  164  5e-40  Pyrobaculum islandicum DSM 4184  Archaea  normal  hitchhiker  0.00000193523 
 
 
-
 
NC_009073  Pcal_1603  3-isopropylmalate dehydratase small subunit  48.45 
 
 
161 aa  164  8e-40  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_013926  Aboo_1465  3-isopropylmalate dehydratase, small subunit  53.12 
 
 
168 aa  164  9e-40  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.00596899  n/a   
 
 
-
 
NC_010424  Daud_1037  3-isopropylmalate dehydratase, small subunit  51.22 
 
 
166 aa  163  1.0000000000000001e-39  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1367  3-isopropylmalate dehydratase, small subunit  50 
 
 
164 aa  162  2.0000000000000002e-39  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2362  3-isopropylmalate dehydratase, small subunit  53.9 
 
 
162 aa  163  2.0000000000000002e-39  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.478432 
 
 
-
 
NC_011661  Dtur_1631  3-isopropylmalate dehydratase, small subunit  50.92 
 
 
166 aa  162  3e-39  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009376  Pars_2062  3-isopropylmalate dehydratase small subunit  45 
 
 
160 aa  162  3e-39  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal  0.127412 
 
 
-
 
NC_009954  Cmaq_1173  3-isopropylmalate dehydratase small subunit  50.61 
 
 
175 aa  161  5.0000000000000005e-39  Caldivirga maquilingensis IC-167  Archaea  normal  normal  0.595401 
 
 
-
 
NC_008942  Mlab_0608  3-isopropylmalate dehydratase, small subunit  50.31 
 
 
158 aa  161  5.0000000000000005e-39  Methanocorpusculum labreanum Z  Archaea  normal  0.864497  normal  0.293783 
 
 
-
 
NC_009634  Mevan_1368  3-isopropylmalate dehydratase, small subunit  53.99 
 
 
161 aa  161  7e-39  Methanococcus vannielii SB  Archaea  normal  0.205096  n/a   
 
 
-
 
NC_007355  Mbar_A2270  3-isopropylmalate dehydratase  50 
 
 
163 aa  160  1e-38  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.310524  normal  0.0869974 
 
 
-
 
NC_011898  Ccel_1621  3-isopropylmalate dehydratase, small subunit  51.52 
 
 
166 aa  160  1e-38  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0186  3-isopropylmalate dehydratase, small subunit  53.25 
 
 
165 aa  160  1e-38  Methanosphaerula palustris E1-9c  Archaea  normal  0.388139  normal  0.0344382 
 
 
-
 
NC_007955  Mbur_1578  3-isopropylmalate dehydratase, small subunit  49.37 
 
 
163 aa  159  2e-38  Methanococcoides burtonii DSM 6242  Archaea  normal  0.0376678  n/a   
 
 
-
 
NC_009767  Rcas_3517  3-isopropylmalate dehydratase, small subunit  49.69 
 
 
170 aa  158  4e-38  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0377  3-isopropylmalate dehydratase, small subunit family protein  49.69 
 
 
166 aa  157  9e-38  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_0403  3-isopropylmalate dehydratase small subunit  48.43 
 
 
164 aa  157  1e-37  Elusimicrobium minutum Pei191  Bacteria  normal  normal  0.583067 
 
 
-
 
NC_010085  Nmar_0421  3-isopropylmalate dehydratase small subunit  52.23 
 
 
160 aa  157  1e-37  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0517519 
 
 
-
 
NC_013173  Dbac_1741  3-isopropylmalate dehydratase small subunit  46.91 
 
 
164 aa  156  2e-37  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2763  3-isopropylmalate dehydratase, small subunit  49.68 
 
 
159 aa  155  3e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.445719  n/a   
 
 
-
 
NC_009135  MmarC5_1257  3-isopropylmalate dehydratase, small subunit  49.69 
 
 
161 aa  155  4e-37  Methanococcus maripaludis C5  Archaea  normal  0.147077  n/a   
 
 
-
 
NC_009637  MmarC7_1379  3-isopropylmalate dehydratase, small subunit  50 
 
 
161 aa  154  6e-37  Methanococcus maripaludis C7  Archaea  normal  normal  0.132083 
 
 
-
 
NC_009635  Maeo_0652  3-isopropylmalate dehydratase, small subunit  50.9 
 
 
165 aa  154  6e-37  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0529  3-isopropylmalate dehydratase, small subunit  48.45 
 
 
161 aa  154  7e-37  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_2076  3-isopropylmalate dehydratase, small subunit  48.05 
 
 
165 aa  153  1e-36  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.894184  normal 
 
 
-
 
NC_009051  Memar_1948  3-isopropylmalate dehydratase, small subunit  46.45 
 
 
163 aa  153  2e-36  Methanoculleus marisnigri JR1  Archaea  normal  0.353439  n/a   
 
 
-
 
NC_013385  Adeg_1101  3-isopropylmalate dehydratase, small subunit  47.85 
 
 
166 aa  153  2e-36  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0426  3-isopropylmalate dehydratase small subunit  48.73 
 
 
167 aa  150  8e-36  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0449  3-isopropylmalate dehydratase small subunit  48.1 
 
 
167 aa  149  2e-35  Dehalococcoides ethenogenes 195  Bacteria  normal  0.844567  n/a   
 
 
-
 
NC_008025  Dgeo_1032  3-isopropylmalate dehydratase small subunit  47.33 
 
 
174 aa  149  2e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.118082  hitchhiker  0.00124766 
 
 
-
 
NC_013552  DhcVS_391  aconitase/homoaconitase C-terminal domain protein, 3-isopropylmalate dehydratase small subunit  48.1 
 
 
167 aa  148  4e-35  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5386  3-isopropylmalate dehydratase, small subunit  37.89 
 
 
168 aa  146  2.0000000000000003e-34  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0128  3-isopropylmalate dehydratase, small subunit  47.53 
 
 
163 aa  145  5e-34  Aciduliprofundum boonei T469  Archaea  normal  0.225854  n/a   
 
 
-
 
NC_009051  Memar_0635  3-isopropylmalate dehydratase, small subunit  44.72 
 
 
156 aa  143  1e-33  Methanoculleus marisnigri JR1  Archaea  normal  0.100869  n/a   
 
 
-
 
NC_011832  Mpal_2144  3-isopropylmalate dehydratase, small subunit  43.48 
 
 
156 aa  138  4.999999999999999e-32  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_1799  3-isopropylmalate dehydratase, small subunit  43.21 
 
 
162 aa  136  2e-31  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_0600  3-isopropylmalate dehydratase, small subunit  42.24 
 
 
156 aa  133  9.999999999999999e-31  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.912906  normal  0.421061 
 
 
-
 
NC_007974  Rmet_5867  3-isopropylmalate dehydratase, small subunit  38.99 
 
 
170 aa  132  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_1365  3-isopropylmalate dehydratase, small subunit  41.82 
 
 
172 aa  130  1.0000000000000001e-29  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2158  3-isopropylmalate dehydratase, small subunit  43.12 
 
 
185 aa  129  3e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.350414 
 
 
-
 
NC_009523  RoseRS_1056  homoaconitate hydratase small subunit  40.13 
 
 
166 aa  127  1.0000000000000001e-28  Roseiflexus sp. RS-1  Bacteria  normal  0.23213  normal 
 
 
-
 
NC_009767  Rcas_3472  homoaconitate hydratase small subunit  39.87 
 
 
166 aa  127  1.0000000000000001e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0185812 
 
 
-
 
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