More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_5368 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_5136  ABC transporter, permease protein  83.36 
 
 
574 aa  889    Pseudomonas putida KT2440  Bacteria  normal  0.897571  normal 
 
 
-
 
NC_007492  Pfl01_5368  binding-protein dependent transport system inner membrane protein  100 
 
 
574 aa  1137    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0329  2-aminoethylphosphonate ABC transport system, permease protein  82.81 
 
 
574 aa  871    Pseudomonas putida W619  Bacteria  normal  normal  0.90369 
 
 
-
 
NC_009512  Pput_5009  binding-protein-dependent transport systems inner membrane component  83.19 
 
 
574 aa  886    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5189  2-aminoethylphosphonate ABC transport system, permease protein  84.41 
 
 
574 aa  875    Pseudomonas putida GB-1  Bacteria  normal  0.534495  normal 
 
 
-
 
NC_007348  Reut_B5524  binding-protein dependent transport system inner membrane protein  62.62 
 
 
580 aa  592  1e-168  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4609  2-aminoethylphosphonate ABC transport system, permease protein  60.75 
 
 
587 aa  557  1e-157  Ralstonia pickettii 12D  Bacteria  normal  0.448301  normal  0.873284 
 
 
-
 
NC_010678  Rpic_4475  2-aminoethylphosphonate ABC transport system, permease protein  60.75 
 
 
587 aa  557  1e-157  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0541435 
 
 
-
 
NC_007948  Bpro_3217  binding-protein-dependent transport systems inner membrane component  49.62 
 
 
603 aa  499  1e-140  Polaromonas sp. JS666  Bacteria  normal  0.0312098  normal 
 
 
-
 
NC_009620  Smed_4879  binding-protein-dependent transport systems inner membrane component  51.31 
 
 
677 aa  494  9.999999999999999e-139  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.426175 
 
 
-
 
NC_007348  Reut_B5872  binding-protein dependent transport system inner membrane protein  50.51 
 
 
580 aa  488  1e-136  Ralstonia eutropha JMP134  Bacteria  normal  0.0388795  n/a   
 
 
-
 
NC_010084  Bmul_3137  2-aminoethylphosphonate ABC transport system, permease protein  51.75 
 
 
575 aa  475  1e-133  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00000101117 
 
 
-
 
NC_009456  VC0395_0543  ABC transporter, permease protein  49.24 
 
 
592 aa  475  1e-132  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6496  ABC Fe3+ siderophore transporter, inner membrane subunit  48.67 
 
 
575 aa  474  1e-132  Burkholderia sp. 383  Bacteria  hitchhiker  0.00359807  normal  0.51818 
 
 
-
 
NC_013457  VEA_000764  ABC transporter, permease protein  43.93 
 
 
574 aa  474  1e-132  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04881  molybdenum ABC transporter ModB  44.11 
 
 
574 aa  471  1.0000000000000001e-131  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010508  Bcenmc03_3161  2-aminoethylphosphonate ABC transport system, permease protein  51.02 
 
 
575 aa  471  1.0000000000000001e-131  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.036888 
 
 
-
 
NC_008786  Veis_0968  binding-protein-dependent transport systems inner membrane component  47.91 
 
 
570 aa  471  1.0000000000000001e-131  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.02178  normal 
 
 
-
 
NC_007948  Bpro_4696  binding-protein-dependent transport systems inner membrane component  50.51 
 
 
568 aa  458  1e-127  Polaromonas sp. JS666  Bacteria  normal  normal  0.832817 
 
 
-
 
NC_008709  Ping_2744  ABC transporter binding protein inner membrane protein  47.34 
 
 
574 aa  457  1e-127  Psychromonas ingrahamii 37  Bacteria  normal  0.928371  normal 
 
 
-
 
NC_011772  BCG9842_B3968  putative iron compound ABC transporter, permease protein  41.52 
 
 
585 aa  448  1.0000000000000001e-124  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1050  binding-protein-dependent transport systems inner membrane component  40.78 
 
 
585 aa  445  1e-123  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.992334  n/a   
 
 
-
 
NC_005957  BT9727_1214  iron ABC transporter permease  42.12 
 
 
583 aa  440  9.999999999999999e-123  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1239  binding-protein-dependent transport systems inner membrane component  41.46 
 
 
585 aa  440  9.999999999999999e-123  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1413  putative iron compound ABC transporter, permease protein  42.3 
 
 
585 aa  441  9.999999999999999e-123  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A1376  putative iron compound ABC transporter, permease protein  41.18 
 
 
585 aa  440  9.999999999999999e-123  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1438  iron compound ABC transporter, permease protein, putative  41.77 
 
 
583 aa  438  1e-121  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1238  iron compound ABC transporter permease  42.7 
 
 
552 aa  437  1e-121  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1216  iron ABC transporter permease  42.12 
 
 
583 aa  438  1e-121  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1479  putative 2-aminoethylphosphonate ABC transport system, permease protein  42.75 
 
 
545 aa  437  1e-121  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1284  2-aminoethylphosphonate ABC transport system, permease protein  45.81 
 
 
592 aa  431  1e-119  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2897  binding-protein-dependent transport systems inner membrane component  42.44 
 
 
586 aa  412  1e-114  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0112953 
 
 
-
 
NC_012917  PC1_1543  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
550 aa  265  1e-69  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.264316  n/a   
 
 
-
 
NC_013421  Pecwa_2919  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
550 aa  265  2e-69  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2029  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
533 aa  223  4.9999999999999996e-57  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000795875 
 
 
-
 
NC_008688  Pden_4650  binding-protein-dependent transport systems inner membrane component  32.15 
 
 
563 aa  202  1.9999999999999998e-50  Paracoccus denitrificans PD1222  Bacteria  normal  0.859078  normal 
 
 
-
 
NC_013203  Apar_0010  binding-protein-dependent transport systems inner membrane component  30.62 
 
 
569 aa  198  3e-49  Atopobium parvulum DSM 20469  Bacteria  normal  0.290045  normal 
 
 
-
 
NC_009635  Maeo_0334  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
543 aa  176  7e-43  Methanococcus aeolicus Nankai-3  Archaea  normal  0.122368  n/a   
 
 
-
 
NC_013530  Xcel_2994  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
579 aa  174  3.9999999999999995e-42  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.434038  n/a   
 
 
-
 
NC_007802  Jann_1364  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
728 aa  170  6e-41  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1365  binding-protein-dependent transport systems inner membrane component  27.66 
 
 
692 aa  164  3e-39  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2486  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
692 aa  162  1e-38  Dickeya dadantii Ech703  Bacteria  normal  0.516839  n/a   
 
 
-
 
NC_013421  Pecwa_1771  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
692 aa  162  2e-38  Pectobacterium wasabiae WPP163  Bacteria  normal  0.715719  n/a   
 
 
-
 
NC_014212  Mesil_1992  binding-protein-dependent transport systems inner membrane component  31.35 
 
 
738 aa  162  2e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0456876  normal 
 
 
-
 
NC_013515  Smon_0282  binding-protein-dependent transport systems inner membrane component  27 
 
 
569 aa  160  7e-38  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_0832  binding-protein-dependent transport systems inner membrane component  26.84 
 
 
692 aa  160  7e-38  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009135  MmarC5_1569  binding-protein-dependent transport systems inner membrane component  25.05 
 
 
545 aa  157  6e-37  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009620  Smed_3753  binding-protein-dependent transport systems inner membrane component  29.46 
 
 
742 aa  156  1e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.151959  normal 
 
 
-
 
NC_009832  Spro_3116  binding-protein-dependent transport systems inner membrane component  27.85 
 
 
741 aa  155  2.9999999999999998e-36  Serratia proteamaculans 568  Bacteria  normal  0.885166  normal 
 
 
-
 
NC_008346  Swol_2480  ABC transporter, permease protein, putative  28.62 
 
 
568 aa  153  8.999999999999999e-36  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6062  binding-protein-dependent transport systems inner membrane component  28.45 
 
 
740 aa  152  1e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.113948  normal 
 
 
-
 
NC_012791  Vapar_1098  binding-protein-dependent transport systems inner membrane component  29.94 
 
 
758 aa  153  1e-35  Variovorax paradoxus S110  Bacteria  normal  0.276526  n/a   
 
 
-
 
NC_004311  BRA0719  ABC transporter, permease protein  27.32 
 
 
741 aa  152  2e-35  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_4318  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
615 aa  152  2e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.242541 
 
 
-
 
NC_008309  HS_0640  Fe3+ ABC transporter, permease  27.11 
 
 
685 aa  152  2e-35  Haemophilus somnus 129PT  Bacteria  normal  0.0125154  n/a   
 
 
-
 
NC_009456  VC0395_0626  iron(III) ABC transporter, permease protein  26.94 
 
 
700 aa  151  3e-35  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1760  binding-protein-dependent transport systems inner membrane component  28.05 
 
 
743 aa  149  1.0000000000000001e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.67824  normal  0.0216249 
 
 
-
 
NC_008346  Swol_2477  ABC-type transporter permease protein  27.03 
 
 
564 aa  149  1.0000000000000001e-34  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.174781  n/a   
 
 
-
 
NC_011353  ECH74115_0434  ABC transporter, permease protein  27.29 
 
 
692 aa  149  1.0000000000000001e-34  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0675  ABC transporter, permease protein  27.14 
 
 
741 aa  149  2.0000000000000003e-34  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3844  binding-protein-dependent transport systems inner membrane component  27.31 
 
 
741 aa  148  2.0000000000000003e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.357299  n/a   
 
 
-
 
NC_009637  MmarC7_1108  binding-protein-dependent transport systems inner membrane component  25.62 
 
 
545 aa  146  1e-33  Methanococcus maripaludis C7  Archaea  normal  0.396425  normal 
 
 
-
 
NC_013170  Ccur_04070  ABC-type Fe3+ transport system, permease component  25.76 
 
 
551 aa  123  8e-27  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.540207 
 
 
-
 
NC_010718  Nther_2889  binding-protein-dependent transport systems inner membrane component  25.47 
 
 
543 aa  122  9.999999999999999e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1586  binding-protein-dependent transport systems inner membrane component  25.2 
 
 
551 aa  122  1.9999999999999998e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0052  binding-protein-dependent transport systems inner membrane component  24.19 
 
 
545 aa  119  9.999999999999999e-26  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.102963  n/a   
 
 
-
 
NC_013173  Dbac_1840  binding-protein-dependent transport systems inner membrane component  26.38 
 
 
561 aa  119  1.9999999999999998e-25  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1555  binding-protein-dependent transport systems inner membrane component  28.74 
 
 
561 aa  117  3.9999999999999997e-25  Thermofilum pendens Hrk 5  Archaea  normal  0.488219  n/a   
 
 
-
 
NC_008752  Aave_3889  binding-protein-dependent transport systems inner membrane component  26.44 
 
 
551 aa  110  8.000000000000001e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_6022  binding-protein-dependent transport systems inner membrane component  27.31 
 
 
558 aa  108  3e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.39431  normal 
 
 
-
 
NC_012560  Avin_21310  ABC transporter, permease component  27.02 
 
 
575 aa  108  3e-22  Azotobacter vinelandii DJ  Bacteria  normal  0.0856621  n/a   
 
 
-
 
NC_008243  Meso_4535  binding-protein-dependent transport systems inner membrane component  25.49 
 
 
579 aa  107  6e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1588  binding-protein-dependent transport systems inner membrane component  24.11 
 
 
563 aa  103  9e-21  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_014150  Bmur_0925  binding-protein-dependent transport systems inner membrane component  22.68 
 
 
554 aa  102  2e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1487  binding-protein-dependent transport systems inner membrane component  26.42 
 
 
544 aa  102  2e-20  Thermofilum pendens Hrk 5  Archaea  normal  0.0741111  n/a   
 
 
-
 
NC_009436  Ent638_2069  binding-protein-dependent transport systems inner membrane component  25.43 
 
 
551 aa  101  3e-20  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2293  binding-protein-dependent transport systems inner membrane component  26.06 
 
 
557 aa  100  9e-20  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_4912  binding-protein-dependent transport systems inner membrane component  24.09 
 
 
547 aa  99.8  1e-19  Paracoccus denitrificans PD1222  Bacteria  normal  0.341081  normal  0.198477 
 
 
-
 
NC_008554  Sfum_3497  binding-protein-dependent transport systems inner membrane component  24.48 
 
 
572 aa  98.6  3e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.699659 
 
 
-
 
NC_012880  Dd703_3232  binding-protein-dependent transport systems inner membrane component  25.15 
 
 
570 aa  98.2  4e-19  Dickeya dadantii Ech703  Bacteria  normal  0.114886  n/a   
 
 
-
 
NC_010002  Daci_4800  binding-protein-dependent transport systems inner membrane component  28 
 
 
579 aa  97.8  4e-19  Delftia acidovorans SPH-1  Bacteria  normal  0.236914  normal 
 
 
-
 
NC_009654  Mmwyl1_1607  binding-protein-dependent transport systems inner membrane component  24.34 
 
 
609 aa  97.8  5e-19  Marinomonas sp. MWYL1  Bacteria  normal  0.900207  normal 
 
 
-
 
NC_012880  Dd703_0298  binding-protein-dependent transport systems inner membrane component  26.47 
 
 
611 aa  95.9  2e-18  Dickeya dadantii Ech703  Bacteria  normal  0.998678  n/a   
 
 
-
 
NC_008688  Pden_4659  binding-protein-dependent transport systems inner membrane component  26.18 
 
 
576 aa  95.9  2e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.57335  normal 
 
 
-
 
NC_002967  TDE0376  ABC transporter, permease protein, putative  24.27 
 
 
539 aa  94.7  4e-18  Treponema denticola ATCC 35405  Bacteria  normal  0.0514897  n/a   
 
 
-
 
NC_011831  Cagg_2417  binding-protein-dependent transport systems inner membrane component  27.22 
 
 
536 aa  94.4  5e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0253396  normal  0.609444 
 
 
-
 
NC_009620  Smed_3963  binding-protein-dependent transport systems inner membrane component  24.25 
 
 
616 aa  94.4  6e-18  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.0013556  normal 
 
 
-
 
NC_009668  Oant_2832  binding-protein-dependent transport systems inner membrane component  25.87 
 
 
559 aa  93.2  1e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.628501  n/a   
 
 
-
 
NC_013202  Hmuk_2276  binding-protein-dependent transport systems inner membrane component  27.89 
 
 
541 aa  91.7  4e-17  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_013922  Nmag_1924  binding-protein-dependent transport systems inner membrane component  24.8 
 
 
540 aa  90.9  6e-17  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013595  Sros_5569  binding-protein-dependent transport systems inner membrane component  24.37 
 
 
608 aa  90.1  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0121  binding-protein-dependent transport systems inner membrane component  24.15 
 
 
560 aa  89.4  1e-16  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2266  binding-protein-dependent transport systems inner membrane component  25.11 
 
 
575 aa  89.4  1e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008243  Meso_4457  binding-protein-dependent transport systems inner membrane component  26.81 
 
 
605 aa  89  2e-16  Chelativorans sp. BNC1  Bacteria  normal  0.453031  n/a   
 
 
-
 
NC_010571  Oter_3589  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
564 aa  88.6  3e-16  Opitutus terrae PB90-1  Bacteria  normal  normal  0.108646 
 
 
-
 
NC_009972  Haur_1721  binding-protein-dependent transport systems inner membrane component  26.45 
 
 
530 aa  87.4  6e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.353247  n/a   
 
 
-
 
NC_009429  Rsph17025_3160  hypothetical protein  22.83 
 
 
572 aa  84.7  0.000000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2480  binding-protein-dependent transport systems inner membrane component  25.43 
 
 
564 aa  84.3  0.000000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.983749 
 
 
-
 
NC_009636  Smed_1947  binding-protein-dependent transport systems inner membrane component  27 
 
 
559 aa  83.2  0.00000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.495401  normal  0.221506 
 
 
-
 
NC_009483  Gura_1307  binding-protein-dependent transport systems inner membrane component  24.73 
 
 
557 aa  82.4  0.00000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>