More than 300 homologs were found in PanDaTox collection
for query gene Lcho_4318 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_4318  binding-protein-dependent transport systems inner membrane component  100 
 
 
615 aa  1185    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.242541 
 
 
-
 
NC_012852  Rleg_6062  binding-protein-dependent transport systems inner membrane component  54.81 
 
 
740 aa  612  9.999999999999999e-175  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.113948  normal 
 
 
-
 
NC_011369  Rleg2_1760  binding-protein-dependent transport systems inner membrane component  54.3 
 
 
743 aa  611  1e-173  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.67824  normal  0.0216249 
 
 
-
 
NC_007802  Jann_1364  binding-protein-dependent transport systems inner membrane component  53.75 
 
 
728 aa  603  1.0000000000000001e-171  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3753  binding-protein-dependent transport systems inner membrane component  53.48 
 
 
742 aa  604  1.0000000000000001e-171  Sinorhizobium medicae WSM419  Bacteria  normal  0.151959  normal 
 
 
-
 
NC_012791  Vapar_1098  binding-protein-dependent transport systems inner membrane component  55.21 
 
 
758 aa  603  1.0000000000000001e-171  Variovorax paradoxus S110  Bacteria  normal  0.276526  n/a   
 
 
-
 
NC_009668  Oant_3844  binding-protein-dependent transport systems inner membrane component  53.06 
 
 
741 aa  601  1e-170  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.357299  n/a   
 
 
-
 
NC_004311  BRA0719  ABC transporter, permease protein  52.65 
 
 
741 aa  594  1e-168  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0675  ABC transporter, permease protein  52.65 
 
 
741 aa  592  1e-168  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3116  binding-protein-dependent transport systems inner membrane component  55.18 
 
 
741 aa  585  1e-166  Serratia proteamaculans 568  Bacteria  normal  0.885166  normal 
 
 
-
 
NC_012917  PC1_1365  binding-protein-dependent transport systems inner membrane component  45.7 
 
 
692 aa  466  9.999999999999999e-131  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1771  binding-protein-dependent transport systems inner membrane component  45.2 
 
 
692 aa  466  9.999999999999999e-131  Pectobacterium wasabiae WPP163  Bacteria  normal  0.715719  n/a   
 
 
-
 
NC_012880  Dd703_2486  binding-protein-dependent transport systems inner membrane component  44.97 
 
 
692 aa  468  9.999999999999999e-131  Dickeya dadantii Ech703  Bacteria  normal  0.516839  n/a   
 
 
-
 
NC_009456  VC0395_0626  iron(III) ABC transporter, permease protein  45.73 
 
 
700 aa  461  9.999999999999999e-129  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0832  binding-protein-dependent transport systems inner membrane component  45.97 
 
 
692 aa  457  1e-127  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_0434  ABC transporter, permease protein  45.97 
 
 
692 aa  444  1e-123  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0640  Fe3+ ABC transporter, permease  45.03 
 
 
685 aa  437  1e-121  Haemophilus somnus 129PT  Bacteria  normal  0.0125154  n/a   
 
 
-
 
NC_014212  Mesil_1992  binding-protein-dependent transport systems inner membrane component  42.64 
 
 
738 aa  317  6e-85  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0456876  normal 
 
 
-
 
NC_013515  Smon_0282  binding-protein-dependent transport systems inner membrane component  35.54 
 
 
569 aa  304  3.0000000000000004e-81  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013530  Xcel_2994  binding-protein-dependent transport systems inner membrane component  40.12 
 
 
579 aa  302  1e-80  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.434038  n/a   
 
 
-
 
NC_013203  Apar_0010  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
569 aa  298  2e-79  Atopobium parvulum DSM 20469  Bacteria  normal  0.290045  normal 
 
 
-
 
NC_008688  Pden_4650  binding-protein-dependent transport systems inner membrane component  37.35 
 
 
563 aa  286  5.999999999999999e-76  Paracoccus denitrificans PD1222  Bacteria  normal  0.859078  normal 
 
 
-
 
NC_009635  Maeo_0334  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
543 aa  246  8e-64  Methanococcus aeolicus Nankai-3  Archaea  normal  0.122368  n/a   
 
 
-
 
NC_009135  MmarC5_1569  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
545 aa  220  5e-56  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1108  binding-protein-dependent transport systems inner membrane component  31.66 
 
 
545 aa  219  8.999999999999998e-56  Methanococcus maripaludis C7  Archaea  normal  0.396425  normal 
 
 
-
 
NC_008346  Swol_2480  ABC transporter, permease protein, putative  31.3 
 
 
568 aa  209  1e-52  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4659  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
576 aa  177  4e-43  Paracoccus denitrificans PD1222  Bacteria  normal  0.57335  normal 
 
 
-
 
NC_009620  Smed_4879  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
677 aa  177  6e-43  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.426175 
 
 
-
 
NC_008346  Swol_2477  ABC-type transporter permease protein  25.92 
 
 
564 aa  170  7e-41  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.174781  n/a   
 
 
-
 
NC_009012  Cthe_1586  binding-protein-dependent transport systems inner membrane component  26.5 
 
 
551 aa  168  2.9999999999999998e-40  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0376  ABC transporter, permease protein, putative  29.25 
 
 
539 aa  167  4e-40  Treponema denticola ATCC 35405  Bacteria  normal  0.0514897  n/a   
 
 
-
 
NC_009674  Bcer98_1050  binding-protein-dependent transport systems inner membrane component  28.79 
 
 
585 aa  165  2.0000000000000002e-39  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.992334  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1239  binding-protein-dependent transport systems inner membrane component  29 
 
 
585 aa  163  7e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0329  2-aminoethylphosphonate ABC transport system, permease protein  30.72 
 
 
574 aa  162  1e-38  Pseudomonas putida W619  Bacteria  normal  normal  0.90369 
 
 
-
 
NC_013170  Ccur_04070  ABC-type Fe3+ transport system, permease component  30.33 
 
 
551 aa  162  2e-38  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.540207 
 
 
-
 
NC_005957  BT9727_1214  iron ABC transporter permease  28.29 
 
 
583 aa  161  3e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1438  iron compound ABC transporter, permease protein, putative  28.09 
 
 
583 aa  161  4e-38  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1238  iron compound ABC transporter permease  28.29 
 
 
552 aa  160  6e-38  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1479  putative 2-aminoethylphosphonate ABC transport system, permease protein  28.29 
 
 
545 aa  160  6e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1216  iron ABC transporter permease  28.29 
 
 
583 aa  159  1e-37  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1413  putative iron compound ABC transporter, permease protein  28.6 
 
 
585 aa  160  1e-37  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009456  VC0395_0543  ABC transporter, permease protein  28.46 
 
 
592 aa  157  7e-37  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3968  putative iron compound ABC transporter, permease protein  27.75 
 
 
585 aa  157  7e-37  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1376  putative iron compound ABC transporter, permease protein  28.2 
 
 
585 aa  156  1e-36  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4475  2-aminoethylphosphonate ABC transport system, permease protein  30.04 
 
 
587 aa  155  1e-36  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0541435 
 
 
-
 
NC_012857  Rpic12D_4609  2-aminoethylphosphonate ABC transport system, permease protein  30.04 
 
 
587 aa  155  1e-36  Ralstonia pickettii 12D  Bacteria  normal  0.448301  normal  0.873284 
 
 
-
 
NC_009512  Pput_5009  binding-protein-dependent transport systems inner membrane component  30.87 
 
 
574 aa  155  2e-36  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5136  ABC transporter, permease protein  30.65 
 
 
574 aa  155  2.9999999999999998e-36  Pseudomonas putida KT2440  Bacteria  normal  0.897571  normal 
 
 
-
 
NC_007492  Pfl01_5368  binding-protein dependent transport system inner membrane protein  30.74 
 
 
574 aa  154  5e-36  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2897  binding-protein-dependent transport systems inner membrane component  30.46 
 
 
586 aa  154  5e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0112953 
 
 
-
 
NC_010322  PputGB1_5189  2-aminoethylphosphonate ABC transport system, permease protein  30.49 
 
 
574 aa  153  1e-35  Pseudomonas putida GB-1  Bacteria  normal  0.534495  normal 
 
 
-
 
NC_007948  Bpro_3217  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
603 aa  150  7e-35  Polaromonas sp. JS666  Bacteria  normal  0.0312098  normal 
 
 
-
 
NC_013171  Apre_0052  binding-protein-dependent transport systems inner membrane component  25.64 
 
 
545 aa  147  5e-34  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.102963  n/a   
 
 
-
 
NC_007348  Reut_B5872  binding-protein dependent transport system inner membrane protein  30.17 
 
 
580 aa  143  7e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.0388795  n/a   
 
 
-
 
NC_010002  Daci_4800  binding-protein-dependent transport systems inner membrane component  27.54 
 
 
579 aa  143  9e-33  Delftia acidovorans SPH-1  Bacteria  normal  0.236914  normal 
 
 
-
 
NC_008554  Sfum_3497  binding-protein-dependent transport systems inner membrane component  25.58 
 
 
572 aa  141  3e-32  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.699659 
 
 
-
 
NC_011769  DvMF_1588  binding-protein-dependent transport systems inner membrane component  27.73 
 
 
563 aa  138  3.0000000000000003e-31  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_012917  PC1_1543  binding-protein-dependent transport systems inner membrane component  28.09 
 
 
550 aa  137  6.0000000000000005e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.264316  n/a   
 
 
-
 
NC_010508  Bcenmc03_3161  2-aminoethylphosphonate ABC transport system, permease protein  30.61 
 
 
575 aa  137  8e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.036888 
 
 
-
 
NC_013172  Bfae_04850  ABC-type Fe3+ transport system, permease component  27.47 
 
 
587 aa  136  9.999999999999999e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1487  binding-protein-dependent transport systems inner membrane component  28.25 
 
 
544 aa  136  9.999999999999999e-31  Thermofilum pendens Hrk 5  Archaea  normal  0.0741111  n/a   
 
 
-
 
NC_007510  Bcep18194_A6496  ABC Fe3+ siderophore transporter, inner membrane subunit  30.27 
 
 
575 aa  135  1.9999999999999998e-30  Burkholderia sp. 383  Bacteria  hitchhiker  0.00359807  normal  0.51818 
 
 
-
 
NC_013457  VEA_000764  ABC transporter, permease protein  26.92 
 
 
574 aa  134  3e-30  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0298  binding-protein-dependent transport systems inner membrane component  28.88 
 
 
611 aa  134  5e-30  Dickeya dadantii Ech703  Bacteria  normal  0.998678  n/a   
 
 
-
 
NC_008752  Aave_3889  binding-protein-dependent transport systems inner membrane component  27.38 
 
 
551 aa  134  6e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4696  binding-protein-dependent transport systems inner membrane component  26.59 
 
 
568 aa  132  1.0000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal  0.832817 
 
 
-
 
NC_010084  Bmul_3137  2-aminoethylphosphonate ABC transport system, permease protein  29.91 
 
 
575 aa  132  1.0000000000000001e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00000101117 
 
 
-
 
NC_014150  Bmur_0925  binding-protein-dependent transport systems inner membrane component  24.96 
 
 
554 aa  131  4.0000000000000003e-29  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1555  binding-protein-dependent transport systems inner membrane component  30.85 
 
 
561 aa  130  5.0000000000000004e-29  Thermofilum pendens Hrk 5  Archaea  normal  0.488219  n/a   
 
 
-
 
NC_009784  VIBHAR_04881  molybdenum ABC transporter ModB  26.63 
 
 
574 aa  130  6e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_2919  binding-protein-dependent transport systems inner membrane component  27.77 
 
 
550 aa  129  1.0000000000000001e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5524  binding-protein dependent transport system inner membrane protein  29.81 
 
 
580 aa  129  1.0000000000000001e-28  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0968  binding-protein-dependent transport systems inner membrane component  27.69 
 
 
570 aa  129  1.0000000000000001e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.02178  normal 
 
 
-
 
NC_008688  Pden_4912  binding-protein-dependent transport systems inner membrane component  27.99 
 
 
547 aa  128  4.0000000000000003e-28  Paracoccus denitrificans PD1222  Bacteria  normal  0.341081  normal  0.198477 
 
 
-
 
NC_008709  Ping_2744  ABC transporter binding protein inner membrane protein  26.26 
 
 
574 aa  126  1e-27  Psychromonas ingrahamii 37  Bacteria  normal  0.928371  normal 
 
 
-
 
NC_009654  Mmwyl1_1607  binding-protein-dependent transport systems inner membrane component  27.67 
 
 
609 aa  125  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.900207  normal 
 
 
-
 
NC_011658  BCAH187_A1867  putative ABC transporter, permease protein  24.2 
 
 
556 aa  125  3e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2069  binding-protein-dependent transport systems inner membrane component  27.58 
 
 
551 aa  124  4e-27  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3481  binding-protein-dependent transport systems inner membrane component  28.49 
 
 
592 aa  122  1.9999999999999998e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2832  binding-protein-dependent transport systems inner membrane component  26.45 
 
 
559 aa  122  1.9999999999999998e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.628501  n/a   
 
 
-
 
NC_012029  Hlac_2696  binding-protein-dependent transport systems inner membrane component  28.38 
 
 
606 aa  122  1.9999999999999998e-26  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_006274  BCZK1564  iron/thiamine ABC transporter permease/Zn-dependent hydrolase  24.65 
 
 
556 aa  121  3.9999999999999996e-26  Bacillus cereus E33L  Bacteria  normal  0.0823842  n/a   
 
 
-
 
NC_009620  Smed_3963  binding-protein-dependent transport systems inner membrane component  26.81 
 
 
616 aa  119  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.0013556  normal 
 
 
-
 
NC_009429  Rsph17025_3160  hypothetical protein  27.19 
 
 
572 aa  117  7.999999999999999e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_1924  binding-protein-dependent transport systems inner membrane component  28.6 
 
 
540 aa  117  8.999999999999998e-25  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008243  Meso_4457  binding-protein-dependent transport systems inner membrane component  27.19 
 
 
605 aa  116  1.0000000000000001e-24  Chelativorans sp. BNC1  Bacteria  normal  0.453031  n/a   
 
 
-
 
NC_010001  Cphy_2143  binding-protein-dependent transport systems inner membrane component  22.12 
 
 
608 aa  116  1.0000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2266  binding-protein-dependent transport systems inner membrane component  26.38 
 
 
575 aa  115  2.0000000000000002e-24  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1754  putative ABC transporter, permease protein  24.44 
 
 
556 aa  115  3e-24  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1612  binding-protein-dependent transport systems inner membrane component  23.83 
 
 
556 aa  114  4.0000000000000004e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.647604  n/a   
 
 
-
 
NC_008701  Pisl_0076  binding-protein-dependent transport systems inner membrane component  28.05 
 
 
600 aa  114  7.000000000000001e-24  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.147749  normal 
 
 
-
 
NC_009654  Mmwyl1_0121  binding-protein-dependent transport systems inner membrane component  28.12 
 
 
560 aa  113  8.000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1937  binding-protein-dependent transport systems inner membrane component  25.42 
 
 
606 aa  113  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1807  binding-protein-dependent transport systems inner membrane component  26.19 
 
 
732 aa  112  2.0000000000000002e-23  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3589  putative ABC transporter, permease protein  23.92 
 
 
556 aa  110  9.000000000000001e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_2276  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
541 aa  110  1e-22  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_013173  Dbac_1840  binding-protein-dependent transport systems inner membrane component  28.23 
 
 
561 aa  109  2e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3589  binding-protein-dependent transport systems inner membrane component  28.69 
 
 
564 aa  109  2e-22  Opitutus terrae PB90-1  Bacteria  normal  normal  0.108646 
 
 
-
 
NC_012917  PC1_1220  binding-protein-dependent transport systems inner membrane component  25.64 
 
 
551 aa  109  2e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0321782  n/a   
 
 
-
 
NC_010718  Nther_2889  binding-protein-dependent transport systems inner membrane component  26.1 
 
 
543 aa  107  8e-22  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
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