| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4879 |
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| Symbol | |
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| ID | 5318041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1385320 |
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| End bp | 1387353 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640776664 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001313596 |
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| Protein GI | 150377000 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
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| TIGRFAM ID | [TIGR03262] putative 2-aminoethylphosphonate ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.426175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTTG CTGTCGATTT CCTTCCGCCC GGCCGAGCCC TTCGCCAGCA GATTTCCGAC
GATGACAGGC TCAAGCGCGC AGTCATGTTC GTCGTCGGCA TCTATCTGGT TATCGCGCTT
GCAATACCGC TTTTCGTGAT GCTGTCGAAA TCGCTTTCCA CGTACACGTT CGATCTTCAT
CAATTTGAGT TCCAGGTGAG TGACGAGAGC GGAGGAGGGT GGAGCGACCC TGTTACGGCT
GCGGCGCTCA ACACAGCCAT CGCCGCCTTT CCCGAAAGCG ATCTCGAGGC CGGTGCCGAC
GGAAGGCTGC AGGCGGCCAA ACTCTTTGCA GATTTCAGTT TCCGCAGCCC GGTCAGATAC
CGCATCCGCG GCACGAGCGA AGAGGCGCAC TTCCTTGCCG GCTCGCAACT GGTGCGCGGG
ACCGAGTGGA AGGAATATGA CAGCAACCAT TTCCGGCGCG TGATGCTGCG GCCATCGCGC
TCGGTCGGGC TCTCCAACTT CACGGAATAT TTTTCGACGC CGTCACTCGT CCGCTCAATC
AAGAATTCGG TGATGATTGC GTTAATCAGC ACGGCAGTCA CCCTCACCGT CGCCTTCGGC
CTCGCCTATG CCCTGAACAG AAGCCGGATG CGGGGGAAGG GGGCGTTCAA GCTCATTGTC
ACGATCCCGA TCCTCGTGCC GTCTCTCTTG CCCGGTATCG CGCTGGTGTA TCTGTTCGGC
AATCAGGGCG TCTTCAAGGA TTTGCTGCTC GGGCATTCGA TCTATGGTCC GCTCGGCATC
GTCGTGGGCT CGGTGTTCTT CACTTTGCCG CATGCCTTTC TGATCATTTC GACGGCGCTG
TCGGTCGCCG ATGCCCGTCA CTACGAGGCG GCAACGTCAC TTCGTGCAAG CAGGTGGCGG
ACCTTCTGGA CCGTTACCGT GCCCGGCGCC CGCTACGGCC TGATCTCCGC CGCCTTCGTC
GTTTTCACGC TGGTCATCAC CGATTTCGGG CTGCCCAAGG TCATCGGCGG GCAATATGGC
ATGCTCGCAG TCGACATCTA CAAGCAGGTC ATCGGCCAGC AGAATTTCGA AATGGGCGCC
GTCGTCTCGG TCATCCTGCT GATCCCTGCA TTCCTCGCAT TCGCCGTCGA TCGCATGACG
CAGCGCCGGC AAGTGGCGCT GCTCTCCGCA CGCGCAGTAC CCTTCGAGCC GAAACCACGA
CGCGGTTTCG ATGCGGCTTG TTTCGCCTTC TGCTCACTGG TCGCAATCTT CGTGCTCGGC
ATGATCGGTA TGTGCCAGGT CGCGGCGCTC GTGAAATTCT GGCCTTACGA TCTCAGCCTG
TCGCTGCGCA ACTATGCCTT CGACCTCATG GATGGCGGCG GCTGGGATGC CTATTACAAT
TCGATCCGGC TCGCTCTCAT GACTGCTGTC ATTGGATCGC TGATCGTGTT CACCGGTGCC
TATATGGTCG AAAAAACCAA GGGTTTCGGC TTGGGCCGAG GTGCATTCCA CATGCTTGCC
ATGTTGCCCA TGGCCGTACC GGGCATGGTT CTGGGTCTTG CCTACATCTT CTTCTTCAAC
AACCCGGGAA ACCCGTTGCA CGGTATCTAC GGCACGATGG CCATCCTGGT ATTATGCACC
GTCACGCATT TCTATACCGT CGCCCATCTG ACCGCCCTCA CGGCGCTCAA GCAGTTGGAT
CCGGAATTCG AGGCCGTGGC CGACTCATTG AAGATACCGT TCTACAAGCT CTTCTTCCGG
GTCACCTTGC CGGTGTGCCT GCCGGCCCTG CTCGAGATCG CGATCTATCT CTTCGTCAAC
GCGATGACGA CTGTCTCGGC GGTCGTGTTC CTCTATGCCA CGGATACGAA GCTTGCTTCG
GTAGCGATCC TCAACATGGA CGATGCAGGC GACATAGCCC CGGCGGCCGC GATGGGCATG
ATGATCTTTT ATACCAACGT GGCGGCAAAA CTGCTCCACG CAGTCGTAGC GCGGCTGCTT
CTTGCCCGCA CACAGGGCTG GCGGCAGGTG GCGCAGACCG CGGTGCCAGC GTGA
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| Protein sequence | MTLAVDFLPP GRALRQQISD DDRLKRAVMF VVGIYLVIAL AIPLFVMLSK SLSTYTFDLH
QFEFQVSDES GGGWSDPVTA AALNTAIAAF PESDLEAGAD GRLQAAKLFA DFSFRSPVRY
RIRGTSEEAH FLAGSQLVRG TEWKEYDSNH FRRVMLRPSR SVGLSNFTEY FSTPSLVRSI
KNSVMIALIS TAVTLTVAFG LAYALNRSRM RGKGAFKLIV TIPILVPSLL PGIALVYLFG
NQGVFKDLLL GHSIYGPLGI VVGSVFFTLP HAFLIISTAL SVADARHYEA ATSLRASRWR
TFWTVTVPGA RYGLISAAFV VFTLVITDFG LPKVIGGQYG MLAVDIYKQV IGQQNFEMGA
VVSVILLIPA FLAFAVDRMT QRRQVALLSA RAVPFEPKPR RGFDAACFAF CSLVAIFVLG
MIGMCQVAAL VKFWPYDLSL SLRNYAFDLM DGGGWDAYYN SIRLALMTAV IGSLIVFTGA
YMVEKTKGFG LGRGAFHMLA MLPMAVPGMV LGLAYIFFFN NPGNPLHGIY GTMAILVLCT
VTHFYTVAHL TALTALKQLD PEFEAVADSL KIPFYKLFFR VTLPVCLPAL LEIAIYLFVN
AMTTVSAVVF LYATDTKLAS VAILNMDDAG DIAPAAAMGM MIFYTNVAAK LLHAVVARLL
LARTQGWRQV AQTAVPA
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