More than 300 homologs were found in PanDaTox collection
for query gene PP_0355 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0355  response regulator receiver protein  100 
 
 
189 aa  376  1e-103  Pseudomonas putida KT2440  Bacteria  normal  0.279631  normal  0.829668 
 
 
-
 
NC_009512  Pput_0381  response regulator receiver protein  97.24 
 
 
181 aa  350  1e-95  Pseudomonas putida F1  Bacteria  normal  0.020205  normal  0.875608 
 
 
-
 
NC_010322  PputGB1_0383  response regulator receiver protein  90 
 
 
178 aa  316  1e-85  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00444309  normal  0.184383 
 
 
-
 
NC_010501  PputW619_4847  response regulator receiver protein  79.73 
 
 
147 aa  223  1e-57  Pseudomonas putida W619  Bacteria  normal  0.0738416  normal 
 
 
-
 
NC_007005  Psyr_4701  response regulator receiver  48.99 
 
 
148 aa  125  3e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5184  response regulator receiver domain-containing protein  52.7 
 
 
148 aa  119  3e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0546005  normal  0.118263 
 
 
-
 
NC_004578  PSPTO_0472  response regulator  50.86 
 
 
130 aa  112  4.0000000000000004e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  41.18 
 
 
446 aa  79.3  0.00000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  36.43 
 
 
515 aa  70.1  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_2491  LuxR response regulator receiver  38.02 
 
 
211 aa  69.3  0.00000000003  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000456787  normal 
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  37.1 
 
 
455 aa  69.3  0.00000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  35.9 
 
 
473 aa  68.9  0.00000000004  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  36.84 
 
 
457 aa  67  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_013926  Aboo_1082  response regulator receiver protein  31.9 
 
 
194 aa  67  0.0000000002  Aciduliprofundum boonei T469  Archaea  normal  0.167563  n/a   
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
459 aa  66.2  0.0000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  36.84 
 
 
473 aa  66.6  0.0000000002  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  36.13 
 
 
469 aa  66.2  0.0000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3376  two component, sigma-54 specific, Fis family transcriptional regulator  31.4 
 
 
466 aa  65.5  0.0000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.418945 
 
 
-
 
NC_011145  AnaeK_4373  two component, sigma54 specific, transcriptional regulator, Fis family  35.29 
 
 
469 aa  65.5  0.0000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4396  two component, sigma54 specific, transcriptional regulator, Fis family  35.29 
 
 
469 aa  65.5  0.0000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2124  two component, sigma54 specific, transcriptional regulator, Fis family  37.29 
 
 
474 aa  65.5  0.0000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0345179 
 
 
-
 
NC_014150  Bmur_0291  two component, sigma54 specific, transcriptional regulator, Fis family  32.77 
 
 
444 aa  65.5  0.0000000005  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00612417  n/a   
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  33.06 
 
 
448 aa  65.1  0.0000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_010681  Bphyt_1136  two component, sigma54 specific, transcriptional regulator, Fis family  31.4 
 
 
466 aa  65.5  0.0000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2242  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
464 aa  65.1  0.0000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.719582 
 
 
-
 
NC_007973  Rmet_3090  Fis family transcriptional regulator  38.05 
 
 
560 aa  65.1  0.0000000005  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  38.18 
 
 
459 aa  64.7  0.0000000007  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0904  two component Fis family transcriptional regulator  37.5 
 
 
454 aa  64.7  0.0000000008  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.629928  normal 
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  35.78 
 
 
458 aa  64.7  0.0000000009  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  31.62 
 
 
269 aa  64.3  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  34.96 
 
 
451 aa  64.3  0.000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  38.1 
 
 
393 aa  63.2  0.000000002  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_003295  RSc2807  response regulator transcription regulator protein  38.94 
 
 
570 aa  63.5  0.000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.524986 
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  35.25 
 
 
446 aa  63.5  0.000000002  Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  38.1 
 
 
393 aa  63.5  0.000000002  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  34.48 
 
 
157 aa  63.2  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  38.1 
 
 
393 aa  63.2  0.000000002  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_010814  Glov_1479  two component, sigma54 specific, transcriptional regulator, Fis family  34.43 
 
 
445 aa  63.5  0.000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  33.62 
 
 
258 aa  63.2  0.000000002  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_010803  Clim_1831  multi-sensor signal transduction histidine kinase  36.11 
 
 
685 aa  63.5  0.000000002  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  36.97 
 
 
412 aa  63.5  0.000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  35.16 
 
 
214 aa  63.5  0.000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_007964  Nham_1906  response regulator FixJ  32.48 
 
 
205 aa  63.2  0.000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.700153  n/a   
 
 
-
 
NC_008639  Cpha266_0165  multi-sensor hybrid histidine kinase  37.98 
 
 
826 aa  63.5  0.000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  37.4 
 
 
210 aa  62.8  0.000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_007484  Noc_1717  two component LuxR family transcriptional regulator  33.33 
 
 
205 aa  62.8  0.000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  35.9 
 
 
412 aa  62.8  0.000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_010682  Rpic_3052  two component, sigma54 specific, transcriptional regulator, Fis family  38.05 
 
 
541 aa  62.8  0.000000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
456 aa  62.8  0.000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
456 aa  62.8  0.000000003  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  35.16 
 
 
214 aa  62.8  0.000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_012856  Rpic12D_2642  two component, sigma54 specific, transcriptional regulator, Fis family  38.05 
 
 
542 aa  62.8  0.000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1654  response regulator, putative  32.5 
 
 
349 aa  62.4  0.000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  35.77 
 
 
445 aa  62.4  0.000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_013204  Elen_0682  two component transcriptional regulator, winged helix family  32.48 
 
 
243 aa  62.4  0.000000004  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0181  two component, sigma54 specific, Fis family transcriptional regulator  36.13 
 
 
423 aa  62.4  0.000000004  Methylobacillus flagellatus KT  Bacteria  normal  decreased coverage  0.000041492 
 
 
-
 
NC_007948  Bpro_2468  PAS/PAC sensor hybrid histidine kinase  35.56 
 
 
1049 aa  62.4  0.000000004  Polaromonas sp. JS666  Bacteria  normal  0.858637  normal  0.0946099 
 
 
-
 
NC_009656  PSPA7_5187  two-component response regulator PilR  35.77 
 
 
445 aa  62.4  0.000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0241  LuxR family transcriptional regulator  34.17 
 
 
216 aa  62  0.000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  35.9 
 
 
457 aa  61.6  0.000000006  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  37.21 
 
 
212 aa  61.6  0.000000006  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  30.77 
 
 
462 aa  61.6  0.000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_007298  Daro_0031  helix-turn-helix, Fis-type  35.59 
 
 
421 aa  61.6  0.000000007  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.992354 
 
 
-
 
NC_007492  Pfl01_0651  response regulator receiver domain-containing protein  41.38 
 
 
135 aa  61.6  0.000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  32 
 
 
250 aa  61.6  0.000000007  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_007958  RPD_1342  response regulator FixJ  32.5 
 
 
205 aa  61.6  0.000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.400465  normal 
 
 
-
 
NC_011662  Tmz1t_0666  two component transcriptional regulator, Fis family  35.04 
 
 
180 aa  61.2  0.000000008  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  37.4 
 
 
211 aa  61.2  0.000000008  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  37.4 
 
 
211 aa  61.2  0.000000008  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_007484  Noc_0723  two component, sigma-54 specific, Fis family transcriptional regulator  34.43 
 
 
444 aa  61.2  0.000000009  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00153946  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  31.03 
 
 
449 aa  61.2  0.000000009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1919  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  31.93 
 
 
350 aa  61.2  0.000000009  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.179225 
 
 
-
 
NC_010515  Bcenmc03_4219  two component LuxR family transcriptional regulator  33.59 
 
 
212 aa  61.2  0.000000009  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.186755  normal  0.698621 
 
 
-
 
NC_007925  RPC_0827  acetoacetate metabolism regulatory protein AtoC  34.71 
 
 
460 aa  61.2  0.000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.158461 
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  37.17 
 
 
153 aa  61.2  0.000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_3351  two component, sigma54 specific, Fis family transcriptional regulator  34.86 
 
 
465 aa  60.8  0.00000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_010338  Caul_3038  response regulator receiver protein  35.54 
 
 
173 aa  60.8  0.00000001  Caulobacter sp. K31  Bacteria  normal  0.815906  normal 
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  36.92 
 
 
212 aa  60.8  0.00000001  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_010505  Mrad2831_3286  two component transcriptional regulator  35.77 
 
 
253 aa  60.8  0.00000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  37.5 
 
 
394 aa  60.1  0.00000002  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  34.55 
 
 
450 aa  60.1  0.00000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  31.2 
 
 
205 aa  60.1  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_007347  Reut_A2943  helix-turn-helix, Fis-type  35.9 
 
 
529 aa  59.7  0.00000002  Ralstonia eutropha JMP134  Bacteria  normal  0.0374645  n/a   
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  33.87 
 
 
451 aa  60.5  0.00000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2556  DNA-binding transcriptional activator DcuR  33.62 
 
 
239 aa  59.7  0.00000002  Enterobacter sp. 638  Bacteria  normal  normal  0.109677 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  34.38 
 
 
214 aa  60.1  0.00000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_010622  Bphy_2148  two component, sigma54 specific, Fis family transcriptional regulator  30.36 
 
 
503 aa  59.7  0.00000002  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.000181807 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  33.87 
 
 
451 aa  60.5  0.00000002  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  34.45 
 
 
461 aa  59.3  0.00000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_007005  Psyr_0722  helix-turn-helix, Fis-type  32 
 
 
445 aa  59.3  0.00000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4388  response regulator receiver  44.44 
 
 
135 aa  59.7  0.00000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.561324  normal 
 
 
-
 
NC_007404  Tbd_2771  two component Fis family transcriptional regulator  33.61 
 
 
449 aa  59.3  0.00000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.195731 
 
 
-
 
NC_009720  Xaut_3389  response regulator receiver protein  34.96 
 
 
211 aa  59.3  0.00000003  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011728  BbuZS7_0791  acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor)  33.62 
 
 
451 aa  59.3  0.00000003  Borrelia burgdorferi ZS7  Bacteria  normal  0.261898  n/a   
 
 
-
 
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