More than 300 homologs were found in PanDaTox collection
for query gene Daro_0031 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_0031  helix-turn-helix, Fis-type  100 
 
 
421 aa  845    Dechloromonas aromatica RCB  Bacteria  normal  normal  0.992354 
 
 
-
 
NC_011662  Tmz1t_4083  two component, sigma54 specific, transcriptional regulator, Fis family  59.24 
 
 
415 aa  460  9.999999999999999e-129  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0019  two component Fis family transcriptional regulator  51.54 
 
 
424 aa  397  1e-109  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.217538 
 
 
-
 
NC_007947  Mfla_0181  two component, sigma54 specific, Fis family transcriptional regulator  51.19 
 
 
423 aa  391  1e-107  Methylobacillus flagellatus KT  Bacteria  normal  decreased coverage  0.000041492 
 
 
-
 
NC_007614  Nmul_A0389  two component, sigma54 specific, Fis family transcriptional regulator  50 
 
 
432 aa  375  1e-103  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2848  nitrogen regulation protein NtrX, putative  36.04 
 
 
455 aa  251  2e-65  Methylococcus capsulatus str. Bath  Bacteria  normal  0.754871  n/a   
 
 
-
 
NC_011901  Tgr7_0200  two component, sigma54 specific, transcriptional regulator, Fis family  36.58 
 
 
458 aa  238  2e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.162426  n/a   
 
 
-
 
NC_008340  Mlg_2623  two component, sigma54 specific, Fis family transcriptional regulator  36.59 
 
 
456 aa  236  5.0000000000000005e-61  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_2268  two component, sigma54 specific, transcriptional regulator, Fis family  36.14 
 
 
459 aa  236  7e-61  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00701331 
 
 
-
 
NC_007484  Noc_3019  two component, sigma-54 specific, Fis family transcriptional regulator  35.73 
 
 
455 aa  223  3e-57  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2080  two component, sigma54 specific, transcriptional regulator, Fis family  33.69 
 
 
461 aa  221  1.9999999999999999e-56  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0024  nitrogen assimilation regulatory protein NtrX, putative  34.5 
 
 
468 aa  205  1e-51  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0025  two component, sigma54 specific, transcriptional regulator, Fis family  34.5 
 
 
468 aa  205  1e-51  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0807039 
 
 
-
 
NC_007520  Tcr_0188  two component, sigma54 specific, Fis family transcriptional regulator  32.23 
 
 
452 aa  201  9.999999999999999e-51  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_2074  two component Fis family transcriptional regulator  70.87 
 
 
227 aa  185  1.0000000000000001e-45  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1772  two component transcriptional regulator, Fis family  70.87 
 
 
227 aa  184  3e-45  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.979845 
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  33.05 
 
 
461 aa  181  2e-44  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_009505  BOV_1073  nitrogen regulation protein NtrX  30.15 
 
 
453 aa  179  9e-44  Brucella ovis ATCC 25840  Bacteria  normal  0.13211  n/a   
 
 
-
 
NC_004310  BR1115  nitrogen regulation protein NtrX  30.15 
 
 
453 aa  179  1e-43  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_4000  two component Fis family transcriptional regulator  70.16 
 
 
240 aa  178  2e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000203773 
 
 
-
 
NC_007347  Reut_A3402  helix-turn-helix, Fis-type  72.88 
 
 
236 aa  177  3e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.0473986  n/a   
 
 
-
 
NC_008825  Mpe_A0275  putative two component response regulator transcription regulator protein  67.18 
 
 
229 aa  176  5e-43  Methylibium petroleiphilum PM1  Bacteria  normal  0.625871  normal  0.0173821 
 
 
-
 
NC_008347  Mmar10_1444  two component, sigma54 specific, Fis family transcriptional regulator  29.44 
 
 
462 aa  176  5e-43  Maricaulis maris MCS10  Bacteria  normal  0.433874  hitchhiker  0.000626634 
 
 
-
 
NC_009667  Oant_2210  two component, sigma54 specific, Fis family transcriptional regulator  29.93 
 
 
453 aa  176  6e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3671  two component transcriptional regulator, Fis family  59.49 
 
 
236 aa  176  7e-43  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0042  two component Fis family transcriptional regulator  72.88 
 
 
229 aa  176  8e-43  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2269  two component Fis family transcriptional regulator  68.42 
 
 
224 aa  176  8e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.606138  normal  0.860572 
 
 
-
 
NC_012856  Rpic12D_3348  two component transcriptional regulator, Fis family  67.97 
 
 
237 aa  176  9e-43  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_3058  two component Fis family transcriptional regulator  70.97 
 
 
233 aa  175  9.999999999999999e-43  Burkholderia ambifaria MC40-6  Bacteria  normal  0.151149  normal 
 
 
-
 
NC_008390  Bamb_3175  response regulator receiver protein  70.97 
 
 
233 aa  175  9.999999999999999e-43  Burkholderia ambifaria AMMD  Bacteria  normal  0.320814  n/a   
 
 
-
 
NC_007973  Rmet_3559  response regulator receiver domain-containing protein  72.88 
 
 
238 aa  174  1.9999999999999998e-42  Cupriavidus metallidurans CH34  Bacteria  normal  0.0874597  normal 
 
 
-
 
NC_011989  Avi_2137  two component response regulator  29.63 
 
 
454 aa  174  1.9999999999999998e-42  Agrobacterium vitis S4  Bacteria  normal  0.354757  n/a   
 
 
-
 
NC_010508  Bcenmc03_3136  two component Fis family transcriptional regulator  73.73 
 
 
233 aa  174  2.9999999999999996e-42  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.230449  normal  0.232677 
 
 
-
 
NC_007510  Bcep18194_A6471  two component Fis family transcriptional regulator  73.73 
 
 
233 aa  173  3.9999999999999995e-42  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2506  response regulator receiver protein  73.73 
 
 
233 aa  174  3.9999999999999995e-42  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.000665817  n/a   
 
 
-
 
NC_008752  Aave_4525  two component Fis family transcriptional regulator  73.73 
 
 
238 aa  173  5e-42  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0135  DNA-binding response regulator  69.35 
 
 
228 aa  173  5e-42  Burkholderia thailandensis E264  Bacteria  normal  0.719023  n/a   
 
 
-
 
NC_009484  Acry_2036  two component, sigma54 specific, Fis family transcriptional regulator  31.89 
 
 
465 aa  173  5.999999999999999e-42  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_3117  two component Fis family transcriptional regulator  73.73 
 
 
233 aa  173  5.999999999999999e-42  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.00594667  normal 
 
 
-
 
NC_003295  RSc0078  two component response regulator transcription regulator protein  68.25 
 
 
239 aa  172  1e-41  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00000511995  normal 
 
 
-
 
NC_006348  BMA0149  DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0760476  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2798  DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0353  DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia pseudomallei 1710b  Bacteria  normal  0.450752  n/a   
 
 
-
 
NC_009080  BMA10247_2360  DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia mallei NCTC 10247  Bacteria  normal  0.405701  n/a   
 
 
-
 
NC_010681  Bphyt_0316  two component transcriptional regulator, Fis family  72.03 
 
 
229 aa  172  1e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0168  Fis family DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia pseudomallei 1106a  Bacteria  normal  0.75283  n/a   
 
 
-
 
NC_007951  Bxe_A4409  two component Fis family transcriptional regulator  72.03 
 
 
229 aa  172  1e-41  Burkholderia xenovorans LB400  Bacteria  normal  0.352798  normal 
 
 
-
 
NC_012850  Rleg_1817  two component, sigma54 specific, transcriptional regulator, Fis family  30.35 
 
 
454 aa  172  1e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.40055  normal  0.0414102 
 
 
-
 
NC_008782  Ajs_3891  two component Fis family transcriptional regulator  72.88 
 
 
232 aa  172  1e-41  Acidovorax sp. JS42  Bacteria  normal  normal  0.569436 
 
 
-
 
NC_008836  BMA10229_A2282  DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0153588  n/a   
 
 
-
 
NC_009074  BURPS668_0158  Fis family DNA-binding response regulator  72.03 
 
 
227 aa  172  1e-41  Burkholderia pseudomallei 668  Bacteria  normal  0.135474  n/a   
 
 
-
 
NC_011992  Dtpsy_3240  two component transcriptional regulator, Fis family  72.88 
 
 
232 aa  172  1e-41  Acidovorax ebreus TPSY  Bacteria  normal  0.450687  n/a   
 
 
-
 
NC_011369  Rleg2_1630  two component, sigma54 specific, transcriptional regulator, Fis family  30 
 
 
454 aa  171  2e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.325918  normal  0.3827 
 
 
-
 
NC_008687  Pden_4127  two component, sigma54 specific, Fis family transcriptional regulator  31.08 
 
 
462 aa  171  2e-41  Paracoccus denitrificans PD1222  Bacteria  normal  0.142345  normal  0.982236 
 
 
-
 
NC_008254  Meso_1616  two component, sigma54 specific, Fis family transcriptional regulator  30.87 
 
 
453 aa  171  3e-41  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1092  two component, sigma54 specific, Fis family transcriptional regulator  29.37 
 
 
454 aa  170  4e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.452222  normal 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  28.6 
 
 
455 aa  170  5e-41  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_011365  Gdia_0483  two component, sigma54 specific, transcriptional regulator, Fis family  31.1 
 
 
463 aa  168  1e-40  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.457372  hitchhiker  0.00163645 
 
 
-
 
NC_011004  Rpal_2865  two component, sigma54 specific, transcriptional regulator, Fis family  30 
 
 
455 aa  169  1e-40  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.826261  n/a   
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  28.48 
 
 
451 aa  167  2.9999999999999998e-40  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_011666  Msil_0531  two component, sigma54 specific, transcriptional regulator, Fis family  28.17 
 
 
455 aa  166  5e-40  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_3629  two component Fis family transcriptional regulator  64.34 
 
 
224 aa  165  1.0000000000000001e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.334527 
 
 
-
 
NC_010581  Bind_1521  two component, sigma54 specific, Fis family transcriptional regulator  29.31 
 
 
455 aa  165  1.0000000000000001e-39  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0597009  normal  0.119428 
 
 
-
 
NC_011757  Mchl_3050  two component, sigma54 specific, transcriptional regulator, Fis family  28.42 
 
 
456 aa  164  3e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  30.23 
 
 
465 aa  164  3e-39  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_010002  Daci_0516  two component Fis family transcriptional regulator  69.49 
 
 
223 aa  164  3e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0663038 
 
 
-
 
NC_010172  Mext_2823  sigma-54 factor interaction domain-containing protein  28.42 
 
 
456 aa  164  3e-39  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.337446 
 
 
-
 
NC_010725  Mpop_2941  two component, sigma54 specific, transcriptional regulator, Fis family  28.42 
 
 
456 aa  164  3e-39  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2880  two component, sigma54 specific, Fis family transcriptional regulator  30 
 
 
455 aa  163  4.0000000000000004e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.765557  normal 
 
 
-
 
NC_007493  RSP_2840  nitrogen assimilation transcriptional regulator, NtrX  28.29 
 
 
476 aa  163  5.0000000000000005e-39  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1454  two component, sigma54 specific, Fis family transcriptional regulator  28.29 
 
 
476 aa  163  5.0000000000000005e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.396257  normal  0.115169 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  27.89 
 
 
476 aa  163  7e-39  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_008783  BARBAKC583_0543  nitrogen assimilation regulatory protein NtrX  29.01 
 
 
452 aa  162  1e-38  Bartonella bacilliformis KC583  Bacteria  normal  0.0470736  n/a   
 
 
-
 
NC_007958  RPD_2592  two component, sigma54 specific, transcriptional regulator, Fis family  29.68 
 
 
455 aa  162  1e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0156101 
 
 
-
 
NC_009428  Rsph17025_1490  two component, sigma54 specific, Fis family transcriptional regulator  29.03 
 
 
476 aa  162  1e-38  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.592217 
 
 
-
 
NC_009952  Dshi_1572  nitrogen assimilation regulator receiver protein  28.13 
 
 
471 aa  161  2e-38  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.181589  normal  0.0771654 
 
 
-
 
NC_009511  Swit_0250  two component, sigma54 specific, Fis family transcriptional regulator  30.15 
 
 
462 aa  161  3e-38  Sphingomonas wittichii RW1  Bacteria  normal  0.0876875  normal  0.0815584 
 
 
-
 
NC_010505  Mrad2831_1492  two component, sigma54 specific, Fis family transcriptional regulator  28.51 
 
 
454 aa  160  4e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.649493  normal  0.276422 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  29.48 
 
 
454 aa  160  5e-38  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  29.4 
 
 
458 aa  159  8e-38  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6543  two component, sigma54 specific, transcriptional regulator, Fis family  28.23 
 
 
456 aa  159  8e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4072  two component, sigma54 specific, Fis family transcriptional regulator  28.45 
 
 
456 aa  159  1e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.4137 
 
 
-
 
NC_007802  Jann_2240  two component, sigma54 specific, Fis family transcriptional regulator  28.7 
 
 
465 aa  158  1e-37  Jannaschia sp. CCS1  Bacteria  normal  0.261318  normal 
 
 
-
 
NC_009720  Xaut_4397  two component, sigma54 specific, Fis family transcriptional regulator  29.37 
 
 
455 aa  159  1e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  0.090562  normal 
 
 
-
 
NC_010511  M446_5941  two component, sigma54 specific, Fis family transcriptional regulator  28.01 
 
 
456 aa  158  2e-37  Methylobacterium sp. 4-46  Bacteria  normal  0.439532  normal  0.466453 
 
 
-
 
NC_008044  TM1040_1359  two component, sigma54 specific, Fis family transcriptional regulator  29.17 
 
 
472 aa  158  2e-37  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_3120  response regulator receiver protein  73.15 
 
 
223 aa  158  2e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0108559  n/a   
 
 
-
 
NC_007925  RPC_2580  two component, sigma54 specific, Fis family transcriptional regulator  28.04 
 
 
456 aa  157  3e-37  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.164177  normal  0.273143 
 
 
-
 
NC_007794  Saro_1930  two component, sigma54 specific, Fis family transcriptional regulator  29.37 
 
 
461 aa  156  5.0000000000000005e-37  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0594  response regulator receiver protein  72.03 
 
 
233 aa  155  1e-36  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1447  nitrogen assimilation regulatory protein ntrX  27.86 
 
 
456 aa  155  2e-36  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.835635  normal 
 
 
-
 
NC_007643  Rru_A1680  two component, sigma54 specific, Fis family transcriptional regulator  29.07 
 
 
466 aa  154  2.9999999999999998e-36  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.905905  n/a   
 
 
-
 
NC_007948  Bpro_4433  two component Fis family transcriptional regulator  71.19 
 
 
225 aa  154  2.9999999999999998e-36  Polaromonas sp. JS666  Bacteria  normal  0.337273  normal 
 
 
-
 
NC_007799  ECH_0339  putative nitrogen regulation protein NtrX  29.21 
 
 
465 aa  154  4e-36  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1839  two component, sigma54 specific, Fis family transcriptional regulator  27.11 
 
 
456 aa  153  4e-36  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0668  nitrogen assimilation regulatory protein ntrX  28.97 
 
 
471 aa  151  3e-35  Ehrlichia canis str. Jake  Bacteria  normal  0.514616  n/a   
 
 
-
 
NC_009719  Plav_3127  two component, sigma54 specific, Fis family transcriptional regulator  28.02 
 
 
464 aa  150  4e-35  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.816597 
 
 
-
 
NC_007908  Rfer_3587  response regulator receiver domain-containing protein  70.34 
 
 
225 aa  150  4e-35  Rhodoferax ferrireducens T118  Bacteria  normal  0.157723  n/a   
 
 
-
 
NC_013061  Phep_2519  sigma-54 factor interaction domain-containing protein  27.23 
 
 
468 aa  149  7e-35  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  31 
 
 
462 aa  148  2.0000000000000003e-34  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
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