| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2580 |
|---|
| Symbol | |
|---|
| ID | 3970919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2803104 |
|---|
| End bp | 2804474 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637925690 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_532449 |
|---|
| Protein GI | 90424079 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.164177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.273143 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATG ACATTCTGAT TGTCGACGAC GAAGCCGATA TTCGCGACCT CGTCGCCGGC
ATCCTCGAGG ACGAGGGCTT CACCACCCGC ACCGCGCGCG ACAGCGATTC CGCGCTGGCC
GAGGTGTCGA ACCGCCGTCC CAACCTGGTG TTCCTGGACA TCTGGCTGCA GGGCTCGAAG
CTCGACGGCC TGCAGTTGCT GGAGCAGATC AAGCGCGAGC ACGCCGACGT GCCGGTGGTG
ATGATCTCCG GCCACGGCAA CATCGAAACC GCGGTGGCGG CGATCAAGCG CGGCGCCTAC
GACTTCATCG AAAAGCCGTT CAAGTCGGAC CGGCTGATCC TGGTGGCGAC GCGGGCGCTG
GAGACCTCGC GGTTGAAACG CGAAGTCAAG GAATTGAAGC AGCAGGCGCC GATCGCCTCG
ACGCTGATGG GGCATTCCGC CTGCATGAAT CAGCTGCGCC AGACCATCGA GCGCGCGGCG
AAAGCCAATA GCCGGATCCT GATCGTCGGC CCAAGCGGCG CCGGCAAGGA GCTCGCGGCG
CGGACGTTGC ACAACGCCTC CGGCCGCTCC GAGGGCCCGT TCGTGGTGAT CAACGCCGCG
GCGATCACCC CGGAGCGCAT GGAGGTCGAG CTGTTCGGCG TCGAGCAGAG CAACGGCGAG
CAGCCGCGCA AGGCCGGCGC GCTGGAAGAG GCGCATGGCG GCACGCTGTT CATCGACGAA
ATCGGCGACA TGCCGCGCGA GACCCAGAAC AAGATTCTGC GGGTGCTGGT CGATCAGACC
TTCCAGCGCG CCGGCGGCAC CATCAAGGTC AATGTCGACG TCCGCATCGT CTCCTCGACG
GCGCGAAATC TCGAGGAGGA GATCGCCGAA GGCCGCTTCC GCGAGGATCT CTATCACCGG
CTCTCGGTGG TGCCGATCCG GGTGCCGCCC TTGTCGGAGC GCCGCGAGGA CATTCCCGAA
CTGATCGAAT ATTTCATGGA TCAGATCTCG CTCGCCACCG GGCTGCCGAA ACGCCAGATC
GGCGCCGACG CCATGGCGGT GCTGCAGTCG CACGTCTGGC CGGGCAACGT CCGGCAGTTG
CGCAACAACG TCGAGCGGGT GATGATTCTG GCCGGCGGCG GCCCGGAGGT GATCATCACC
GCCGACATGC TGCCGCAGGA CGTCGGCTCG ATGGTGCCGA CCATGCCGAC CGGCACCAAT
GGCGAGCACA TCATGGGGCT GCCGCTGCGC GAGGCCCGCG AGGTGTTCGA ACGCGACTAT
CTGATCGCGC AGATCAGCCG GTTTTCCGGC AACATCTCCC GCACCGCCGA ATTCGTCGGC
ATGGAGCGCT CGGCGCTGCA TCGCAAGCTC AAGGCGCTCG GCGTCGGCTG A
|
|---|
| Protein sequence | MANDILIVDD EADIRDLVAG ILEDEGFTTR TARDSDSALA EVSNRRPNLV FLDIWLQGSK
LDGLQLLEQI KREHADVPVV MISGHGNIET AVAAIKRGAY DFIEKPFKSD RLILVATRAL
ETSRLKREVK ELKQQAPIAS TLMGHSACMN QLRQTIERAA KANSRILIVG PSGAGKELAA
RTLHNASGRS EGPFVVINAA AITPERMEVE LFGVEQSNGE QPRKAGALEE AHGGTLFIDE
IGDMPRETQN KILRVLVDQT FQRAGGTIKV NVDVRIVSST ARNLEEEIAE GRFREDLYHR
LSVVPIRVPP LSERREDIPE LIEYFMDQIS LATGLPKRQI GADAMAVLQS HVWPGNVRQL
RNNVERVMIL AGGGPEVIIT ADMLPQDVGS MVPTMPTGTN GEHIMGLPLR EAREVFERDY
LIAQISRFSG NISRTAEFVG MERSALHRKL KALGVG
|
|---|
| |