| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2519 |
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| Symbol | |
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| ID | 8253626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2922018 |
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| End bp | 2923424 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644936169 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_003092785 |
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| Protein GI | 255532413 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAT TATTAATAAT TGATGATGAA AGGGCAATAA GAAGTACGCT CCGTGAGATT
TTAGAATACG AGAATTACGA GGTTGAAGAT ATTGACAATG GTATTGACGG ACTGGAACTG
ATCAAAAAAA AGAAATTTGA TCTTGTACTG TGCGACATTA AAATGAATAA AATGGATGGT
ATGGAAGTAC TGGAACAGGC CCTGGCCTAT AGTCCGGATC TTCCTTTCAT CATGATATCT
GGCCATGGTA CTGTAGAAAC CGCCATAGAA GCCAGCAAAA AAGGGGCGTT TGATTTTATA
TCTAAACCAC CCGATCTGAA CAGATTGTTG ATTACAGTCA GAAATGCCCT GGACAGGGGT
AATCTGGTTA CTGAAACTAA GGTATTAAAA AGAAAAGTAA GCAAGACCAG GGACATCCTG
GGCAGTTCAG AAAATATTGG AAAAATTAAA GAAACCATTG AACGTGTTGC GCCTACTGAA
GCCAGGGTAT TGATTACAGG TGCAAATGGT AGTGGTAAAG AGTTGGTGGC ACGCTGGCTG
CACGAGAAAT CGCAACGTGC AGAAAGTCCG CTTATAGAAG TAAACTGTGC TGCAATCCCG
TCGGAACTGA TAGAAAGTGA ACTATTTGGT CATGAAAAGG GTTCATTTAC CTCTGCAGTA
AAACAACGTA TCGGTAAGTT TGAACTGGCC AATGGCGGCA CTTTGTTTTT AGATGAGATT
GGCGACATGA GCCTGTCTGC GCAGGCTAAA GTACTTCGAG CCTTACAGGA ACATAAAATT
ACACGTGTAG GTGGAGAAAA AGAACTGGAA GTCAATGTCC GAGTACTGGC GGCGACAAAT
AAAGACTTGC TCAAAGAAAT TGAAGCCGGA AATTTCAGAA TGGACTTATA CCACCGTTTA
AATGTGATCA ATATTCATGT TCCACATTTA ACTGAGCGTA CAGAGGACAT CCCCGAAATT
GCCTTAAACT TTCTTGAAGA AATTTGCAGG GACTACGGTA TGCCGGTTAA AAAAATCAGT
GATGGGGCTA TGACAGCCTT ACAGGCTTTG CCATGGACAG GGAATGTCCG TGAATTGCAC
AATATGATTG AGCGGCTGAT TATTTTAAGT GATAAGGTTA TTACTGAAAA TGATGTAATT
GCTTTTGCGA ATCCTGGCGG CGGGACCAAT ATTGGGGCTG TAAATACGGC GAATGGCCAG
TCAGGACTGG CGCATGGGCC GACAGTTGAT TATGATAAAT TTAATAATTT CCAGGATTAT
AAAGATCATG CAGAAAGGGA ATTTATTAAA TTCAAGCTGG AAAAAAACAA CTGGAATGTA
TCTAAAACAG CTGATGATAT TGAAATCCAG CGTAGTCACC TATACAGTAA GATTGAAAAA
TTCGGTTTGA AAAGGGTAGC AGAATAA
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| Protein sequence | MAKLLIIDDE RAIRSTLREI LEYENYEVED IDNGIDGLEL IKKKKFDLVL CDIKMNKMDG
MEVLEQALAY SPDLPFIMIS GHGTVETAIE ASKKGAFDFI SKPPDLNRLL ITVRNALDRG
NLVTETKVLK RKVSKTRDIL GSSENIGKIK ETIERVAPTE ARVLITGANG SGKELVARWL
HEKSQRAESP LIEVNCAAIP SELIESELFG HEKGSFTSAV KQRIGKFELA NGGTLFLDEI
GDMSLSAQAK VLRALQEHKI TRVGGEKELE VNVRVLAATN KDLLKEIEAG NFRMDLYHRL
NVINIHVPHL TERTEDIPEI ALNFLEEICR DYGMPVKKIS DGAMTALQAL PWTGNVRELH
NMIERLIILS DKVITENDVI AFANPGGGTN IGAVNTANGQ SGLAHGPTVD YDKFNNFQDY
KDHAEREFIK FKLEKNNWNV SKTADDIEIQ RSHLYSKIEK FGLKRVAE
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