| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0025 |
|---|
| Symbol | |
|---|
| ID | 6875974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 28193 |
|---|
| End bp | 29599 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642787904 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
|---|
| Protein accession | YP_002218494 |
|---|
| Protein GI | 198282173 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0807039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATG CACGATTGAA TATTCTGGTG GTAGATGACG AACCCGATAT CTGCGCGACC
CTGGCAGAAA TTCTGGAGGA CGAAGGCTAC GGCGTGCATA CCGCCGGTAG TGCGGAAGCG
GCCGAAGTGC TGTTGCGCGA GCAGATGGTG GACCTCGTAC TCCTCGATAT CTGGATGCCG
GGTGAGGATG GCGTCAGCCT CTTGCGACGC TGGGCCGAAA CGGGTCTGGC GCAGCCGGTG
GTGATGATGT CCGGGCACGC CACCATCGAA ACGGCGGTGC AGGCGACCAA GCTGGGCGCC
TATGACTTCA TCGAAAAGCC ACTGTCGTTG GACAAGACCC TGCTTACCGT CACCCATGCC
CTGGAATCCA GCCGCTTGCA GCGCGAGAAC CGGGATCTGC GTGCGCAGGC GGGTTGGGTG
GAGCGACCGA GCGGTGACAG TCCGGCCATC CGCCAGTTCC GCGAACAGTT GCAGCGGGTG
GCGGCGGTGG ATTCCTGGGC CTTGCTGCTG GGCGAGCCGG GCAGCGGCAA GGAAGTGGCC
GCGCGTTATC TGCACCGACG AAGCCGGCGG GCACAGGGGC CTTTCGTGGA TCTGCGTGCC
GCCGCCATCG CCCGCCCCAA TGTGGCGGTC GAACTGTTCG GCAGCGAGGA GCATGGCAAG
CTGACCCGCG GGCGTCTGGA AGTCGCCCAT GGCGGCACGC TCTTCATCGA CGAAATTGCC
GATATGGATC TGGAAACTCA GGCGCGCCTG TTCTCGGCAC TGCAGGAGCG GCGCATCATC
CGGGTGGGCG GGACGACGCC CGTGCCCGTG GATGTGCGCG TTATCGCCGG GAGTGCGCAG
GATCTGGCGC ACGCGGTGCA GAGCGGGCAA TTTCGCAGCG ATCTCTACTA CCGTCTCAGC
GCCCTGCCCC TGAAGGTGCC GCCGCTGTCG GCGCGGAGTG TGGATATTCC GGTGCTCATA
GAAGAGTTCG TACGCTTTTA TGGCGCTCGC GATGGTCTGG CGCCGCGCCG TTTTGCCCCG
GAAACCCTGG AGGTGCTGCG GCATTATCCA TGGCCGGGCA ATATCCGGGA ATTGCAGAAC
CTGGTGGAAC GCCTGCTGAT TCTGGCGGAA GGCCCGGAGA TCAGCGCGGA AGAGGTGGAG
GGCGCCCTGG GACTGGATAA TCGTCTCGTC CTCGCCAACA GCAATTTCGA CGGGGAAGAT
TTCGGCGGTA CCCTGAAGCG CGCGCGGGAG CGCTTCGAGC GCGCCTTCCT GGAGTACCAT
CTGGCGCGTA ACGAGTGGAA TATCGCGCGG ACGGCGGAAG TGGTAGGGCT GGAGCGCACA
CATCTCTATC GCAAGCTGAA GAACCTGAGT ATCGCCCTGA AGGGCGAGCG GCGGGCGGGC
GAGGATGGGG ATGAGGGGGA GGGGTGA
|
|---|
| Protein sequence | MEDARLNILV VDDEPDICAT LAEILEDEGY GVHTAGSAEA AEVLLREQMV DLVLLDIWMP
GEDGVSLLRR WAETGLAQPV VMMSGHATIE TAVQATKLGA YDFIEKPLSL DKTLLTVTHA
LESSRLQREN RDLRAQAGWV ERPSGDSPAI RQFREQLQRV AAVDSWALLL GEPGSGKEVA
ARYLHRRSRR AQGPFVDLRA AAIARPNVAV ELFGSEEHGK LTRGRLEVAH GGTLFIDEIA
DMDLETQARL FSALQERRII RVGGTTPVPV DVRVIAGSAQ DLAHAVQSGQ FRSDLYYRLS
ALPLKVPPLS ARSVDIPVLI EEFVRFYGAR DGLAPRRFAP ETLEVLRHYP WPGNIRELQN
LVERLLILAE GPEISAEEVE GALGLDNRLV LANSNFDGED FGGTLKRARE RFERAFLEYH
LARNEWNIAR TAEVVGLERT HLYRKLKNLS IALKGERRAG EDGDEGEG
|
|---|
| |