Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3127 |
Symbol | |
ID | 5454652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 3337870 |
End bp | 3339264 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640878717 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001414391 |
Protein GI | 154253567 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 0.816597 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTCTG ATATTCTGAT TGTCGATGAT GAAGCCGATA TCAGGGAGCT GGTGTCGGGC ATTCTGAACG ATGAAGGCTA TGACACCCGC AGCGCGGGCG ACAGCGATCG TGCGCTCGCG GCGATAGAGG CGCGCCGGCC GGGGCTCGTC ATCCTCGACA TCTGGTTGCA AGGCAGCAAA CTCGACGGGC TGGAGGTTCT CGACGTTATC CGTGAGCGGC ATCCGGACCT TCCCGTCATC ATCATCAGCG GTCACGGCAA TATCGAAACG GCCGTCTCCG CCATCAAGAA AGGCGCCTAC GACTTCATTG AAAAGCCCTT CAAGGCGGAT CGCCTCATTC TGGTCGTGCG CCGCGCGATT GAAACTTTCC GCTTGCGCCG GGAAAACAGT GAGCTGCGCG TCCGGGTCGG TGACGACACC ACCTTGATCG GTTTTTCTCC CGCCATGGCG CAGGTGCGTC AGACGATTGA CAAGGTTGCA CCGACAAACA GCCGCGTCCT CATCACGGGT GCCTCCGGTG CGGGCAAGGA GGTGGTCGCC CGCCTTCTGC ATGCCCGCTC TCGCCGTGCG GGTCATTCCT TCGTCGCCAT CAATGCGGCA AACATGGCGC CGGAGCGCAT GGAGATCGAG CTTTTCGGCA CGGAGGAAAG CGCCGCCGGT CCGAGAAAGG TCGGCGTTTT CGAGCAGGCG CATGGCGGCA CACTATTCCT CGATGAAGTT GCCGAGATGC CGGTGGAGAC GCAGAGCAAG ATCCTGCGTG TGCTGGTCGA TCAGACATTC GAGCGCGTCG GCGGCGGCTC GCGCGTCAAA GTGGATGTGC GCGTCGTTTC CTCGTCCAGC CACGACCTGC TTGAGGAAAT CGCAAAAGGC CGCTTCCGCG AAGACCTTTA TCATCGCCTG AACGTGGTGC CGATTTTCGT GCCTCCGCTC GCCTCGCGGC GCGAGGATAT CCCCGCGCTT GTCGAGTACT TCATGGAATT GATTTCCAAG GGAACAGGCC TGCCAGCCCG CCGCGTGTCG GAAGACGCCA TGGCGGCACT CCAGGCGCAT GACTGGCCGG GCAATGTCCG GCAGCTGCGC AATAATATCG AGCGCCTGCT GATCCTGACA TCCGGCGATC CGACGGCCGT TGTCACCGCC GATATGCTTC CCTCCGAAGT GGGCGCATCC GCGCAGATGA CGGTCAACGG CGCCGGCGGC GAGCACATCA TGGCATTGCC GCTGCGCGAG GCACGGGAAA CCTTCGAACG CGAATATCTG ATAGCGCAGA TAAGCCGGTT TGGCGGCAAC ATTTCACGCA CAGCCGCCTT TATCGGCATG GAGCGTTCGG CGCTCCATCG CAAGCTGAAA TCGCTCGGCG TCGCCGCCGC CAGCCGCCCC GACGTGCCGG CATGA
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Protein sequence | MASDILIVDD EADIRELVSG ILNDEGYDTR SAGDSDRALA AIEARRPGLV ILDIWLQGSK LDGLEVLDVI RERHPDLPVI IISGHGNIET AVSAIKKGAY DFIEKPFKAD RLILVVRRAI ETFRLRRENS ELRVRVGDDT TLIGFSPAMA QVRQTIDKVA PTNSRVLITG ASGAGKEVVA RLLHARSRRA GHSFVAINAA NMAPERMEIE LFGTEESAAG PRKVGVFEQA HGGTLFLDEV AEMPVETQSK ILRVLVDQTF ERVGGGSRVK VDVRVVSSSS HDLLEEIAKG RFREDLYHRL NVVPIFVPPL ASRREDIPAL VEYFMELISK GTGLPARRVS EDAMAALQAH DWPGNVRQLR NNIERLLILT SGDPTAVVTA DMLPSEVGAS AQMTVNGAGG EHIMALPLRE ARETFEREYL IAQISRFGGN ISRTAAFIGM ERSALHRKLK SLGVAAASRP DVPA
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