| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2468 |
|---|
| Symbol | |
|---|
| ID | 4014890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2577392 |
|---|
| End bp | 2580541 |
|---|
| Gene Length | 3150 bp |
|---|
| Protein Length | 1049 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637942133 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_549285 |
|---|
| Protein GI | 91788333 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.858637 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0946099 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACAA GTACGCCATC GTCCGGTTCA CCCGTGAAAA TCCTGATCGT GGAAGACAGC
CCCACCCAGG CCCAACAACT GCAGCATATC CTTGAACAGG AAGGCTACGA AGTTGGCATT
GCCCGCAATG GCCGACTCGC GCTGAAAATG CTACCCCAGT TCCGGCCCGC ACTGATCATC
AGCGACGTGA TCATGCCGGA AATGGACGGC TATGAGCTTT CCCGCCGAAT CAAGACGCAG
CCCGATCTTC GCAACATACC GGTCATCCTC GTCACCACCA TGTCCGATCC GCAGGACGTG
ATCCGTGGAC TGGAGTGCGG GGCTGATAAC TTCGTCCTCA AGCCCTATGA CGAGCGCTAT
ATGCTGGCTC GTGTGCGTTA TGTGCTCGTC AATCGGGAAA TGCACCGGGA ACAGGATATG
GGCTTGGGGG TGGAAATCTA CTTCAATGAC CAGAGGCATT TCATCACTGC CGATCGTTTG
CAGATCCTCA ACCTCCTGCT GTCCACGTAT GACGCCGCCA TCCAGCGCAA CAAGGACCTC
ACCCAAACCC AGGAATCATT GGGGCAGCGT TCGGCCGAGG TTGCGGCGGT GAACAGATTT
CTCGATTCGG TGATCGAAAC CATCCCCGAC ATGATTTTTG TCAAAGATGC AGCCGACCTG
CGCTTTGTCA GATTCAACCG CGCCGGCGAA GAACTGCTGG GTTACTCCCG GGATGAGTTG
GTTGGCAAAA ATGACTATGA CCTTTTCCCC GAGGCGGAGG CCGACGCCTT CACGTCCAAA
GACCAGGAGG TGCTGACGCG CGGCATGGTG TTGGACATCC CGGAGGAGCC GATCCACACG
CGCAATAAAG GCGACCGGAT CCTGCATACC AAGAAAATCC CGATCTTCGA CAGCAAGGGC
CGGCCACTCT ACCTGTTGGG GATCTCCCGA GATGTTACGG AAAAAAAGAA GCTGGAAGAC
GCACTGCGCA AGCGCAACGA GGAGCTCAGT AAAAGCCAGG AAGACCTGCA GTGGAGCAAT
TCCGAGTTGA ACAAGTTGAG GCTCGCGCTG GAAGCGCGCG TGAACCAGAG AACCCAGCAG
CTGACTGCGG TCGTTGAGGC GTTACGCGAG AGCGAGGCGC GTACCCGGCT CACGATTGAC
ACGGCGCTGG ATGCCGTGGT GGCCATGGAT GCCCATGGAC TTGTCAGGGA GTGGAATGCC
CAGGCGGAAA CCATTTTCGG CTGGAAGCGT GACGAGGCCA TCGGCAAGCC GCTGGCTGGC
CTTGTCATTC CGCGGCAACA TCGTGAAGGC CATGCGCGCG GGTTGGAGCG TTTCCTGGCC
ACCAACGAGG GACCGATATT GAGCCAGCGC CTCGAACTTA CAGCCTTACA CCGGGAGGGT
CGCGAGTTTC CGGTCGAACT ATCCATTACC CCGATGCTGC TTCAGGGGGA GTGGACGTTC
AGCGCGTTTT TGCGTGACAT CACCGACCGC AAGCAGATGG AGGAACGAAC CCTGAACCTG
AACAGGGAGC TCGAGCAGCG CGTGGCGCAA AGGACGACCG AGCTCGTTGC CGCCCGGGAG
GCAGCCGACA CCGCCAACCG CGCCAAGAGC ACTTTTCTGG CCACCATGAG CCACGAGATC
AGGACGCCGA TGAACGGCAT GTTCGGCATG CTCGAACTCC TGGGCCTGAC CGAGCTCGAT
ACCGACCAAC GCGCCACGCT TGCGATCGTG CGTGAATCGA GCCAGTCGCT GCTGTGCATC
ATTGACGACA TCCTCGACTT TTCCAAGATT GAAGCAGGAA AGCTGACGGT TCGCCCCGAG
GTCGCCTCGA TCAAGGACGT TATTGAGCAT GTAAGGAACA TGTACGCCGG TAACGCCAGC
GGCCGGGGCT TGCTGCTCAA GCACGGCACT GATCCGCAAA TCAGCCCCGC GCTGATGTTT
GATCCCTTGC GGCTGGGCCA AATACTCAAC AATCTTGTCA GCAACGCCCT CAAATTCACC
TCCCGCGGCT CGATCGAGAT CAAGGCGGAA CTCATAGCGC GAACCAACGG AGAAGACCAG
GTGCGGTTTG TGGTGACCGA CACCGGCATG GGCGTTTCCG CCGAGGATCA GCAGCGACTG
TTTCAGCCCT TCACCCAGGG CGGGGGCGAC ACGGCGCGGT GGGCTGGTGG CACCGGACTG
GGGCTCACGA TCTGCCGGCG GCTAGCCGGG ATGATGAATG GCACGGTCGA GATGGTGAGC
GAGTTGGGCA AGGGCACGAC CATGATCCTC ACCTTGTCGC TGCCGATCGC CGACCCGAAG
GAACTGGCGA AAATCAGACG GGCGCAGATG CAAGACTCGG CCCGGACCAC CCACACGGCG
CGTCGCGATG CGCCGACCGT TGCGCGCGCC GAGACGGAGG GAACGCTGGT ACTGCTGGTG
GATGACCATC CGGTCAATCG AATGCTCCTG ATGCGGCAGG TGCATGTGCT GGGCTATGCC
GCGGAGAGCG CAAAAAACGG TGTCGAAGCA TTGGCCAAGT GGCAATCGCG CCGGTTCGGG
ATTGTCATCA CCGACTGCAA CATGCCGGAG ATGAATGGCT ATGACCTTGC GCGCAGCATT
CGCGGGCTTG AGTCCGGTAA CGAAGGCAAA CACGTCCCGA TCATCGCTTG TACGGCCAAC
GCACTAAGTG GCGAGGCCGA GAGCTGCTTT GCCGCCGGCA TGGACGACTA CCTTGTGAAA
CCGGTCGAGT TGTCCCAGCT ACGGGAAAAG CTCGATCAAT GGCTGCCGAT TCCGGATGCC
ACCGTCATGC CGGAGGCGAC ATCCGGGACA TCCAGCAAAC ACATGGCGGC AACGGCAGCG
GCCGTCCCGG TCGACCGTTC GGTCATTGCC GAATTTTCGG GCGGCGACGC GTCAACCGAG
CGCCACATAT TCACAGAGTT TCGGAGCGCC AACGACGAAG ATGCTGCCAT GCTCAAGCGG
GCCGTGGCAG CCAGTGATGG CGTGCAGATC ACCCGCACCA CCCACCGCAT GCTGGGCGCC
AGCAGGATGA TCGGCGCGCG GGACTTTGCC AGAGTGTGCG AATCCATCGA GCACGCAAGC
CGCACCAGTG ACTGGGCGGC GGTCGAGGCT CACATGAGCG CGTTCCAGCA CGAATTGCAA
CGCCTGAACG CCTATTTAGA CGCTCTGTGA
|
|---|
| Protein sequence | MSTSTPSSGS PVKILIVEDS PTQAQQLQHI LEQEGYEVGI ARNGRLALKM LPQFRPALII
SDVIMPEMDG YELSRRIKTQ PDLRNIPVIL VTTMSDPQDV IRGLECGADN FVLKPYDERY
MLARVRYVLV NREMHREQDM GLGVEIYFND QRHFITADRL QILNLLLSTY DAAIQRNKDL
TQTQESLGQR SAEVAAVNRF LDSVIETIPD MIFVKDAADL RFVRFNRAGE ELLGYSRDEL
VGKNDYDLFP EAEADAFTSK DQEVLTRGMV LDIPEEPIHT RNKGDRILHT KKIPIFDSKG
RPLYLLGISR DVTEKKKLED ALRKRNEELS KSQEDLQWSN SELNKLRLAL EARVNQRTQQ
LTAVVEALRE SEARTRLTID TALDAVVAMD AHGLVREWNA QAETIFGWKR DEAIGKPLAG
LVIPRQHREG HARGLERFLA TNEGPILSQR LELTALHREG REFPVELSIT PMLLQGEWTF
SAFLRDITDR KQMEERTLNL NRELEQRVAQ RTTELVAARE AADTANRAKS TFLATMSHEI
RTPMNGMFGM LELLGLTELD TDQRATLAIV RESSQSLLCI IDDILDFSKI EAGKLTVRPE
VASIKDVIEH VRNMYAGNAS GRGLLLKHGT DPQISPALMF DPLRLGQILN NLVSNALKFT
SRGSIEIKAE LIARTNGEDQ VRFVVTDTGM GVSAEDQQRL FQPFTQGGGD TARWAGGTGL
GLTICRRLAG MMNGTVEMVS ELGKGTTMIL TLSLPIADPK ELAKIRRAQM QDSARTTHTA
RRDAPTVARA ETEGTLVLLV DDHPVNRMLL MRQVHVLGYA AESAKNGVEA LAKWQSRRFG
IVITDCNMPE MNGYDLARSI RGLESGNEGK HVPIIACTAN ALSGEAESCF AAGMDDYLVK
PVELSQLREK LDQWLPIPDA TVMPEATSGT SSKHMAATAA AVPVDRSVIA EFSGGDASTE
RHIFTEFRSA NDEDAAMLKR AVAASDGVQI TRTTHRMLGA SRMIGARDFA RVCESIEHAS
RTSDWAAVEA HMSAFQHELQ RLNAYLDAL
|
|---|
| |