More than 300 homologs were found in PanDaTox collection
for query gene CHU_2085 on replicon NC_008255
Organism: Cytophaga hutchinsonii ATCC 33406



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008255  CHU_2085  response regulator  100 
 
 
339 aa  685    Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1421  response regulator receiver sensor signal transduction histidine kinase  37.95 
 
 
404 aa  116  5e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010622  Bphy_1145  multi-sensor signal transduction histidine kinase  23.64 
 
 
490 aa  101  2e-20  Burkholderia phymatum STM815  Bacteria  normal  0.894172  normal 
 
 
-
 
NC_007413  Ava_1561  response regulator receiver Signal transduction histidine kinase  36.88 
 
 
443 aa  97.8  3e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.414952 
 
 
-
 
NC_010814  Glov_0703  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  25.57 
 
 
703 aa  96.7  6e-19  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0502  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  25.88 
 
 
705 aa  96.3  7e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0472  sensory box histidine kinase/response regulator  23.08 
 
 
492 aa  94.7  2e-18  Burkholderia mallei SAVP1  Bacteria  normal  0.798891  n/a   
 
 
-
 
NC_009079  BMA10247_A1432  sensory box histidine kinase/response regulator  23.08 
 
 
492 aa  94.7  2e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  0.188442  n/a   
 
 
-
 
NC_008835  BMA10229_0176  sensory box histidine kinase/response regulator  23.08 
 
 
492 aa  94.7  2e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1932  Signal transduction histidine kinase  23.08 
 
 
492 aa  95.1  2e-18  Burkholderia pseudomallei 668  Bacteria  normal  0.0476253  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1842  response regulator/sensory box histidine kinase  23.08 
 
 
492 aa  94.7  2e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0380  sensory box histidine kinase/response regulator  24.6 
 
 
463 aa  93.2  5e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0931  response regulator receiver sensor signal transduction histidine kinase  38.03 
 
 
446 aa  91.7  2e-17  'Nostoc azollae' 0708  Bacteria  normal  0.523505  n/a   
 
 
-
 
NC_006349  BMAA0910  sensory box histidine kinase/response regulator  24.4 
 
 
463 aa  90.1  5e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1009  sensory box histidine kinase/response regulator  25.2 
 
 
463 aa  89.7  6e-17  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  28.4 
 
 
734 aa  88.6  2e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_013037  Dfer_3325  PAS/PAC sensor hybrid histidine kinase  36.43 
 
 
667 aa  87  4e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5226  response regulator receiver sensor signal transduction histidine kinase  36.23 
 
 
388 aa  84.3  0.000000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2350  putative PAS/PAC sensor protein  30 
 
 
450 aa  83.6  0.000000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007796  Mhun_1847  multi-sensor signal transduction histidine kinase  31.02 
 
 
763 aa  83.2  0.000000000000006  Methanospirillum hungatei JF-1  Archaea  normal  0.926751  normal  0.806541 
 
 
-
 
NC_007614  Nmul_A2297  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  27.62 
 
 
1025 aa  82.8  0.000000000000007  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.93563  n/a   
 
 
-
 
NC_011884  Cyan7425_4616  GAF sensor hybrid histidine kinase  28.51 
 
 
701 aa  82.4  0.000000000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.524944 
 
 
-
 
NC_011662  Tmz1t_1312  multi-sensor signal transduction histidine kinase  24.71 
 
 
484 aa  82.8  0.000000000000009  Thauera sp. MZ1T  Bacteria  normal  0.0729257  n/a   
 
 
-
 
NC_010551  BamMC406_1617  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  27.18 
 
 
860 aa  82  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3328  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  28 
 
 
711 aa  82  0.00000000000001  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1597  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  27.1 
 
 
860 aa  81.3  0.00000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.711633  n/a   
 
 
-
 
NC_010510  Mrad2831_6179  response regulator receiver sensor signal transduction histidine kinase  33.33 
 
 
389 aa  80.5  0.00000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.271486 
 
 
-
 
NC_011146  Gbem_2406  multi-sensor hybrid histidine kinase  26.06 
 
 
773 aa  79  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3845  response regulator receiver protein  38.18 
 
 
120 aa  79  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1506  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  27.78 
 
 
704 aa  78.2  0.0000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3929  response regulator receiver protein  38.18 
 
 
120 aa  78.6  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.0321819 
 
 
-
 
NC_008609  Ppro_0902  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  26.39 
 
 
718 aa  77.8  0.0000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  0.651526  n/a   
 
 
-
 
NC_012918  GM21_2710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  27.78 
 
 
704 aa  76.6  0.0000000000005  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00325078 
 
 
-
 
NC_002939  GSU1927  sensory box/response regulator  26.91 
 
 
660 aa  75.1  0.000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1812  PAS/PAC sensor hybrid histidine kinase  25.7 
 
 
773 aa  75.5  0.000000000001  Geobacter sp. M21  Bacteria  n/a    normal  0.021882 
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  36.13 
 
 
391 aa  74.7  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_007796  Mhun_0549  multi-sensor signal transduction histidine kinase  25 
 
 
765 aa  74.7  0.000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3613  multi-sensor hybrid histidine kinase  34.38 
 
 
1808 aa  74.7  0.000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.643019 
 
 
-
 
NC_007796  Mhun_1415  multi-sensor signal transduction histidine kinase  31.79 
 
 
2072 aa  74.3  0.000000000003  Methanospirillum hungatei JF-1  Archaea  normal  0.384608  normal  0.53452 
 
 
-
 
NC_009483  Gura_2373  multi-sensor hybrid histidine kinase  27.78 
 
 
769 aa  74.3  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2552  two component transcriptional regulator, winged helix family  40.78 
 
 
230 aa  73.6  0.000000000005  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000276879  normal  0.180215 
 
 
-
 
NC_008705  Mkms_2732  response regulator receiver protein  35.1 
 
 
407 aa  73.6  0.000000000005  Mycobacterium sp. KMS  Bacteria  normal  0.276002  normal  0.519614 
 
 
-
 
NC_007954  Sden_3603  GGDEF domain-containing protein  31.25 
 
 
570 aa  73.6  0.000000000005  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2688  response regulator receiver modulated serine phosphatase  35.1 
 
 
407 aa  73.6  0.000000000005  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2718  response regulator receiver protein  35.1 
 
 
407 aa  73.6  0.000000000005  Mycobacterium sp. JLS  Bacteria  normal  0.453118  normal  0.333299 
 
 
-
 
NC_010338  Caul_3888  two component transcriptional regulator  31.1 
 
 
223 aa  73.6  0.000000000005  Caulobacter sp. K31  Bacteria  normal  0.130623  normal  0.799765 
 
 
-
 
NC_008345  Sfri_4005  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  27.31 
 
 
696 aa  73.2  0.000000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2788  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  29.77 
 
 
715 aa  72.8  0.000000000007  Dechloromonas aromatica RCB  Bacteria  normal  0.941936  normal 
 
 
-
 
NC_008609  Ppro_3419  response regulator receiver protein  38.05 
 
 
121 aa  73.2  0.000000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3934  DNA-binding response regulator  29 
 
 
223 aa  72.8  0.000000000008  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_4412  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.19 
 
 
726 aa  72.8  0.000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0426067 
 
 
-
 
NC_011726  PCC8801_4350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.19 
 
 
726 aa  72.8  0.000000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008726  Mvan_2987  response regulator receiver protein  33.79 
 
 
391 aa  72  0.00000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.143541  normal  0.900637 
 
 
-
 
NC_010681  Bphyt_1125  two component transcriptional regulator, winged helix family  28.89 
 
 
241 aa  72  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3387  two component transcriptional regulator  28.89 
 
 
241 aa  72  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  33.57 
 
 
239 aa  71.2  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  33.57 
 
 
239 aa  71.2  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  33.57 
 
 
239 aa  71.2  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  33.57 
 
 
239 aa  71.2  0.00000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2816  multi-sensor hybrid histidine kinase  25.89 
 
 
682 aa  71.2  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0864703 
 
 
-
 
NC_009831  Ssed_0712  two component transcriptional regulator  31.67 
 
 
228 aa  72  0.00000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0234002 
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  33.57 
 
 
239 aa  71.2  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_009953  Sare_1090  two component transcriptional regulator  30.54 
 
 
230 aa  71.6  0.00000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0839689 
 
 
-
 
NC_011146  Gbem_0010  multi-sensor signal transduction histidine kinase  39.22 
 
 
511 aa  71.6  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1198  putative chemotaxis protein CheY-like protein  36.13 
 
 
139 aa  71.2  0.00000000002  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3311  response regulator receiver protein  36.52 
 
 
122 aa  71.2  0.00000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0443  lipoprotein  35.59 
 
 
121 aa  71.6  0.00000000002  Campylobacter concisus 13826  Bacteria  normal  0.81181  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  33.57 
 
 
239 aa  71.2  0.00000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3673  response regulator receiver  36.09 
 
 
227 aa  71.6  0.00000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0403  chemotaxis protein CheY  35.4 
 
 
120 aa  70.9  0.00000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.286627  n/a   
 
 
-
 
NC_009338  Mflv_3268  response regulator receiver protein  31.25 
 
 
391 aa  70.9  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1333  response regulator receiver protein  37.86 
 
 
222 aa  71.2  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.40527  normal  0.1595 
 
 
-
 
NC_007355  Mbar_A0404  hypothetical protein  32.65 
 
 
1182 aa  70.9  0.00000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.465468  normal 
 
 
-
 
NC_012857  Rpic12D_4297  two component transcriptional regulator, winged helix family  27.84 
 
 
243 aa  71.2  0.00000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4185  two component transcriptional regulator, winged helix family  27.84 
 
 
243 aa  71.2  0.00000000003  Ralstonia pickettii 12J  Bacteria  normal  0.469867  normal 
 
 
-
 
NC_010725  Mpop_5414  signal transduction histidine kinase  34.72 
 
 
348 aa  70.9  0.00000000003  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1197  response regulator receiver  29.94 
 
 
230 aa  70.9  0.00000000003  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0264  Signal transduction histidine kinase-like  38.89 
 
 
666 aa  70.9  0.00000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0170548 
 
 
-
 
NC_013501  Rmar_2408  PAS/PAC sensor hybrid histidine kinase  31.43 
 
 
647 aa  70.9  0.00000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.385618  n/a   
 
 
-
 
NC_013037  Dfer_0274  two component transcriptional regulator, winged helix family  39.22 
 
 
232 aa  70.9  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.701823  normal  0.83989 
 
 
-
 
NC_010622  Bphy_2160  two component transcriptional regulator  35.85 
 
 
241 aa  70.9  0.00000000003  Burkholderia phymatum STM815  Bacteria  normal  0.71041  hitchhiker  0.000000282055 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  39.62 
 
 
239 aa  70.9  0.00000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0707  winged helix family two component transcriptional regulator  37.86 
 
 
222 aa  70.9  0.00000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0905  two component transcriptional regulator  31.21 
 
 
238 aa  70.5  0.00000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3119  response regulator receiver domain-containing protein  34.51 
 
 
120 aa  70.5  0.00000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0166  response regulator receiver/GGDEF/EAL domain-containing protein  25.47 
 
 
697 aa  70.5  0.00000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0700  sensory box/response regulator  23.05 
 
 
637 aa  70.1  0.00000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  38.68 
 
 
239 aa  70.1  0.00000000005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3317  two component transcriptional regulator  36 
 
 
227 aa  70.1  0.00000000005  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  38.68 
 
 
239 aa  70.1  0.00000000005  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_013889  TK90_0680  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.69 
 
 
1301 aa  70.1  0.00000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.344906  normal  0.0177864 
 
 
-
 
NC_007614  Nmul_A1287  multi-sensor signal transduction histidine kinase  30.77 
 
 
570 aa  70.1  0.00000000005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  38.68 
 
 
239 aa  70.1  0.00000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2534  sensory box/response regulator  35.29 
 
 
452 aa  69.7  0.00000000006  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS03140  two component response regulator transcription regulator protein  26.7 
 
 
245 aa  69.7  0.00000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  0.249511  normal 
 
 
-
 
NC_011901  Tgr7_1114  putative diguanylate phosphodiesterase  35.61 
 
 
568 aa  69.7  0.00000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0992  PAS/PAC sensor hybrid histidine kinase  24.47 
 
 
663 aa  70.1  0.00000000006  Burkholderia phymatum STM815  Bacteria  normal  0.374279  normal 
 
 
-
 
NC_009483  Gura_4220  response regulator receiver protein  35.45 
 
 
120 aa  69.7  0.00000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0008  sensory box histidine kinase/response regulator  30.07 
 
 
516 aa  69.7  0.00000000007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2677  response regulator receiver sensor signal transduction histidine kinase  30.26 
 
 
395 aa  69.7  0.00000000007  Geobacter metallireducens GS-15  Bacteria  normal  0.971959  normal  0.344308 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>