| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3317 |
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| Symbol | |
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| ID | 4923955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3956530 |
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| End bp | 3957213 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164929 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001095442 |
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| Protein GI | 127514245 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAATA CTCAAATACT CATCATAGAA GATAATGCCG ATGTCGCCGG TGTCCTGGGA
GACTATCTCG AATCCCAAGG AGCTCAGGTG GATTATGCCA GCAATGGCGA GCTCGGCCTG
CGCCTCGCCA CCGAAGGGCA CTTCGACGCC ATAGTGCTGG ATCTCATGCT GCCCAAGATG
GACGGCTACG CCGTGGCCAA GGCCCTACGT CAGCAGGGCT CCAGCGTGCC CATATTGATG
CTGACGGCGC TGGACGACAA ACAAGATCTG CTGCAAGGCT TTCATAGTGG CGCCGACGAC
TATCTGACTA AGCCGTTCGA TCTCGATGAG CTGCACGTGC GACTGCTGGC GTTGATCAAG
CGTCAGCTCG GGCGCGTCGC CCAGGGCTGT CAGCAGTGCG GGCCGCTCAC CCTCAACATC
GCCGAGCACA CCGCCTACCG CGATGGCAAG AAGCTGCAGC TGACCCCAAG CTGCTATCAG
ATCCTGCACC TGCTGATCTC CCGCGCCCCC AACGTGGTGA AGAGAGAGGA GATAGTACAG
CACCTGTGGG GAGAAGAACC GCCCAACAGC GACATCTTGC GCAGCCACAT GTACCAGCTG
AGAAATCAGG TGGATAAACC CTTCGACACC CCCATCATAC TCACCGTGCC TAAGATAGGC
TTCCGGTTAG ACGTGAACCA ATAG
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| Protein sequence | MQNTQILIIE DNADVAGVLG DYLESQGAQV DYASNGELGL RLATEGHFDA IVLDLMLPKM
DGYAVAKALR QQGSSVPILM LTALDDKQDL LQGFHSGADD YLTKPFDLDE LHVRLLALIK
RQLGRVAQGC QQCGPLTLNI AEHTAYRDGK KLQLTPSCYQ ILHLLISRAP NVVKREEIVQ
HLWGEEPPNS DILRSHMYQL RNQVDKPFDT PIILTVPKIG FRLDVNQ
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